miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 86503 0.7 0.513034
Target:  5'- -----cGGGGgcggcgGCGcCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGC-GGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 114247 0.7 0.513034
Target:  5'- uGUGUUUugccgcugcGGGG-GCGUCCGCccaguauaaagaGCGCCGCc -3'
miRNA:   3'- -UACAAA---------CUCCaCGCGGGCG------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 116213 0.7 0.522836
Target:  5'- cGUGUUUGAGGcaacgGgGCCUGCuC-CCGCg -3'
miRNA:   3'- -UACAAACUCCa----CgCGGGCGuGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 121678 0.7 0.522836
Target:  5'- ----gUGGGGUGCgGCCCgagcagguGCGCGcCCGCu -3'
miRNA:   3'- uacaaACUCCACG-CGGG--------CGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 101636 0.7 0.532709
Target:  5'- -----cGcGGcgGCGCCCGC-CGCCGCc -3'
miRNA:   3'- uacaaaCuCCa-CGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 55464 0.7 0.532709
Target:  5'- -----cGGGGcGCGCgCCGCGCuaGCCGCu -3'
miRNA:   3'- uacaaaCUCCaCGCG-GGCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 97437 0.7 0.532709
Target:  5'- ---cUUGuuGcUGCGCagCCGCGCGCCGCa -3'
miRNA:   3'- uacaAACucC-ACGCG--GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 48542 0.7 0.532709
Target:  5'- -----cGAGGcGCGCCCGgA-GCCGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGGGCgUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 128629 0.7 0.532709
Target:  5'- cGUGUUccaggcUGAGc-GCGCCgGCgACGCCGCu -3'
miRNA:   3'- -UACAA------ACUCcaCGCGGgCG-UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 86636 0.7 0.542647
Target:  5'- cGUGUggGcGGgccGCGCCgccccggaGCGCGCCGCg -3'
miRNA:   3'- -UACAaaCuCCa--CGCGGg-------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3924 0.7 0.552646
Target:  5'- -------cGGUugcGCGCCCGCgcugGCGCCGCg -3'
miRNA:   3'- uacaaacuCCA---CGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 106737 0.7 0.552646
Target:  5'- -------cGGUugcGCGCCCGCgcugGCGCCGCg -3'
miRNA:   3'- uacaaacuCCA---CGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32896 0.7 0.552646
Target:  5'- -------cGGUGCGCgCCGCGCGCgaGCg -3'
miRNA:   3'- uacaaacuCCACGCG-GGCGUGCGg-CG- -5'
6345 5' -58.2 NC_001847.1 + 51873 0.7 0.560686
Target:  5'- gGUGUgcgccucUGCGCCCGCccCGCCGCg -3'
miRNA:   3'- -UACAaacucc-ACGCGGGCGu-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3779 0.7 0.5627
Target:  5'- ------cGGGUGuCGCCCGCGcCGCCGa -3'
miRNA:   3'- uacaaacUCCAC-GCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 106592 0.7 0.5627
Target:  5'- ------cGGGUGuCGCCCGCGcCGCCGa -3'
miRNA:   3'- uacaaacUCCAC-GCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 78782 0.7 0.5627
Target:  5'- -----cGAGGUcguGcCGCCCGCGC-CCGCg -3'
miRNA:   3'- uacaaaCUCCA---C-GCGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 63578 0.69 0.572803
Target:  5'- ------aAGGUGCGCUCGC-UGCCGUg -3'
miRNA:   3'- uacaaacUCCACGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 42326 0.69 0.572803
Target:  5'- aGUGUUucgugcUGuGG-GCGCCCGUgugGCGCgGCg -3'
miRNA:   3'- -UACAA------ACuCCaCGCGGGCG---UGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 27692 0.69 0.572803
Target:  5'- -gGgcUGAGGcgcgcgaGCGCCgGCGgGCCGCc -3'
miRNA:   3'- uaCaaACUCCa------CGCGGgCGUgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.