miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 28420 0.71 0.465262
Target:  5'- -----cGGGGcuuaGCGCCCuggcGCACGCCGCc -3'
miRNA:   3'- uacaaaCUCCa---CGCGGG----CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 67264 0.71 0.465262
Target:  5'- -gGUUacgUGGGGUGcCGCCguucccaGCGCGUCGCg -3'
miRNA:   3'- uaCAA---ACUCCAC-GCGGg------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 14626 0.71 0.465262
Target:  5'- -----cGuGGUuuucgaccgcgGCGCUCGCGCGCCGCu -3'
miRNA:   3'- uacaaaCuCCA-----------CGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3975 0.71 0.465262
Target:  5'- -----cGAGGUGgGCCgugaGCACGCCaGCg -3'
miRNA:   3'- uacaaaCUCCACgCGGg---CGUGCGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 98684 0.71 0.469001
Target:  5'- ----gUGcAGGUcccgcucacacagccGCGCCgCGCGCGCCGCu -3'
miRNA:   3'- uacaaAC-UCCA---------------CGCGG-GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 29569 0.71 0.474637
Target:  5'- -----cGGGGgcgccgGCGCCgGCGcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 61907 0.71 0.474637
Target:  5'- -----cGAGc-GCGCCCGCGcCGCCGCc -3'
miRNA:   3'- uacaaaCUCcaCGCGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 132382 0.71 0.474637
Target:  5'- -----cGGGGgcgccgGCGCCgGCGcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 82601 0.71 0.484107
Target:  5'- -----cGcGGcgGCGCCUGUGCGCCGCg -3'
miRNA:   3'- uacaaaCuCCa-CGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 26973 0.71 0.484107
Target:  5'- ----aUGAGGUGCGCgCGCagcGCGuCUGCg -3'
miRNA:   3'- uacaaACUCCACGCGgGCG---UGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 119661 0.71 0.484107
Target:  5'- gAUGUUgGAGuaGUagcGCGUCUGCGCGCCGUg -3'
miRNA:   3'- -UACAAaCUC--CA---CGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 91614 0.71 0.484107
Target:  5'- cGUGUUggccgcGAGGaa-GCCCGCgcGCGCCGCc -3'
miRNA:   3'- -UACAAa-----CUCCacgCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 94233 0.71 0.493665
Target:  5'- ------cGGG-GCGCCCGCGCGgCGCc -3'
miRNA:   3'- uacaaacUCCaCGCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 72972 0.71 0.493665
Target:  5'- ---aUUGGGGacgcggacGCGCCCGCGCgggagcugGCCGCa -3'
miRNA:   3'- uacaAACUCCa-------CGCGGGCGUG--------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 10388 0.71 0.503309
Target:  5'- -------cGGUGcCGCCCGCGaGCCGCg -3'
miRNA:   3'- uacaaacuCCAC-GCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 73870 0.71 0.503309
Target:  5'- -----cGGcGGcgcgGCGCCCGCgcGCGCCGCg -3'
miRNA:   3'- uacaaaCU-CCa---CGCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 53806 0.71 0.503309
Target:  5'- -----gGAGGUcuGCGCCCccugGCGCGCCGg -3'
miRNA:   3'- uacaaaCUCCA--CGCGGG----CGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 58069 0.71 0.503309
Target:  5'- -----cGAuuGGcGCGCgCGCGCGCCGCa -3'
miRNA:   3'- uacaaaCU--CCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 113201 0.71 0.503309
Target:  5'- -------cGGUGcCGCCCGCGaGCCGCg -3'
miRNA:   3'- uacaaacuCCAC-GCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 86503 0.7 0.513034
Target:  5'- -----cGGGGgcggcgGCGcCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGC-GGGCGuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.