miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 102228 0.66 0.790146
Target:  5'- -cGUcgGGcGGgacggcguccagGCGCUCGCGCGCgGCg -3'
miRNA:   3'- uaCAaaCU-CCa-----------CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 101909 0.66 0.754502
Target:  5'- -----gGAGGcgccgcgGCGCCCgGCGCGgCGCc -3'
miRNA:   3'- uacaaaCUCCa------CGCGGG-CGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 101793 0.76 0.261643
Target:  5'- -aGggUGAGGUGCgagggGCCCaccgucacgcaGCGCGCCGCc -3'
miRNA:   3'- uaCaaACUCCACG-----CGGG-----------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 101636 0.7 0.532709
Target:  5'- -----cGcGGcgGCGCCCGC-CGCCGCc -3'
miRNA:   3'- uacaaaCuCCa-CGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 101446 0.67 0.695239
Target:  5'- ----cUGGGGgGCGCggaaacugccgCCGCGCGgCCGCa -3'
miRNA:   3'- uacaaACUCCaCGCG-----------GGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 101384 0.72 0.446806
Target:  5'- -----cGGGG-GCuGCCCGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 100867 0.67 0.715303
Target:  5'- -----cGAGcGcgGCGCCCaGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUC-Ca-CGCGGG-CGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 99630 0.73 0.377332
Target:  5'- -----cGAGGaUGCGCUcggCGCGCGCCGUg -3'
miRNA:   3'- uacaaaCUCC-ACGCGG---GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 99561 0.73 0.369172
Target:  5'- -gGUucUUGAGGUuggccagcccgGCGCCCucgucgcggucGCGCGCCGCc -3'
miRNA:   3'- uaCA--AACUCCA-----------CGCGGG-----------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 99452 0.72 0.428764
Target:  5'- -cGUggGAGuUGCGCa-GCGCGCCGCu -3'
miRNA:   3'- uaCAaaCUCcACGCGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 99036 0.67 0.695239
Target:  5'- -----cGuGGaagGCGCCCaGCGCGUCGCc -3'
miRNA:   3'- uacaaaCuCCa--CGCGGG-CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 98684 0.71 0.469001
Target:  5'- ----gUGcAGGUcccgcucacacagccGCGCCgCGCGCGCCGCu -3'
miRNA:   3'- uacaaAC-UCCA---------------CGCGG-GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 98184 0.66 0.782796
Target:  5'- ----------gGCGCCCGCGCugGCCGCa -3'
miRNA:   3'- uacaaacuccaCGCGGGCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 98151 0.69 0.572803
Target:  5'- -----cGAGGUGUuaaGCagcaGCACGCCGCg -3'
miRNA:   3'- uacaaaCUCCACG---CGgg--CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 97555 0.66 0.764054
Target:  5'- -cGcUUGAGGUccuuccggaucGUGUCCGUgagcugGCGCCGCc -3'
miRNA:   3'- uaCaAACUCCA-----------CGCGGGCG------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 97437 0.7 0.532709
Target:  5'- ---cUUGuuGcUGCGCagCCGCGCGCCGCa -3'
miRNA:   3'- uacaAACucC-ACGCG--GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 94233 0.71 0.493665
Target:  5'- ------cGGG-GCGCCCGCGCGgCGCc -3'
miRNA:   3'- uacaaacUCCaCGCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 93654 0.67 0.705302
Target:  5'- gAUGUccgUGAGcUGCuucGUgCGCAUGCCGCg -3'
miRNA:   3'- -UACAa--ACUCcACG---CGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 91885 0.69 0.62381
Target:  5'- -----aGcAGGUGCccCCCGgGCGCCGCg -3'
miRNA:   3'- uacaaaC-UCCACGc-GGGCgUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 91614 0.71 0.484107
Target:  5'- cGUGUUggccgcGAGGaa-GCCCGCgcGCGCCGCc -3'
miRNA:   3'- -UACAAa-----CUCCacgCGGGCG--UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.