miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 113506 0.66 0.773488
Target:  5'- -------cGGUcGCGCCCGgGCGCgGCc -3'
miRNA:   3'- uacaaacuCCA-CGCGGGCgUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 113201 0.71 0.503309
Target:  5'- -------cGGUGcCGCCCGCGaGCCGCg -3'
miRNA:   3'- uacaaacuCCAC-GCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 111314 0.67 0.744841
Target:  5'- -----cGGGGccgUGCGCgCGCugGaCCGCg -3'
miRNA:   3'- uacaaaCUCC---ACGCGgGCGugC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 110699 0.67 0.705302
Target:  5'- -aGggUGAGGgcggcGCGCUCGCcuuugacuuUGCCGCu -3'
miRNA:   3'- uaCaaACUCCa----CGCGGGCGu--------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 109390 0.69 0.582947
Target:  5'- -gGgcUGcGGUGCcgugccgccgccGCCCGC-CGCCGCu -3'
miRNA:   3'- uaCaaACuCCACG------------CGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 109126 0.68 0.668851
Target:  5'- --uUUUGGuGGUuggcccuuuuugugcGCGCCUGCGCGcCCGCc -3'
miRNA:   3'- uacAAACU-CCA---------------CGCGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 108372 0.67 0.714306
Target:  5'- -----gGAGG-GCGCgCGCACugaccagGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGgGCGUG-------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 107342 0.66 0.782796
Target:  5'- -----cGGGGcGCgaauggccagaGCCCGCAccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCG-----------CGGGCGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 106737 0.7 0.552646
Target:  5'- -------cGGUugcGCGCCCGCgcugGCGCCGCg -3'
miRNA:   3'- uacaaacuCCA---CGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 106592 0.7 0.5627
Target:  5'- ------cGGGUGuCGCCCGCGcCGCCGa -3'
miRNA:   3'- uacaaacUCCAC-GCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 106172 0.74 0.35322
Target:  5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3'
miRNA:   3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 105880 0.65 0.798304
Target:  5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3'
miRNA:   3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 105752 0.67 0.735082
Target:  5'- -gGUUagGAGG-GC-CUCGCGCGCgGCa -3'
miRNA:   3'- uaCAAa-CUCCaCGcGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 105599 0.68 0.654548
Target:  5'- -cGUgcGGGGgaacucgaGCGCCCGC--GCCGCg -3'
miRNA:   3'- uaCAaaCUCCa-------CGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 104999 0.68 0.685124
Target:  5'- ------cAGG-GCGCaCgGCGCGCCGCg -3'
miRNA:   3'- uacaaacUCCaCGCG-GgCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 104382 0.67 0.69322
Target:  5'- -----cGAGGccagcacggcgcGCGCCaGCGCGCCGCu -3'
miRNA:   3'- uacaaaCUCCa-----------CGCGGgCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 104337 0.66 0.767842
Target:  5'- cGUGUUUGccgcGGcggcagacgcggcgGCGUCCGCGC-CCGCa -3'
miRNA:   3'- -UACAAACu---CCa-------------CGCGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 103181 0.72 0.41116
Target:  5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 103170 0.67 0.713308
Target:  5'- -----cGAGGgcggcguccacgGgGCCCGC-CGCCGCc -3'
miRNA:   3'- uacaaaCUCCa-----------CgCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 102802 0.67 0.744841
Target:  5'- -----gGGGGcUGgGCCCccucCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCC-ACgCGGGc---GUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.