miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 122919 0.67 0.695239
Target:  5'- -cGUUcG-GGUGUGC--GCGCGCCGCg -3'
miRNA:   3'- uaCAAaCuCCACGCGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 122568 0.74 0.337761
Target:  5'- -aGUgcGAGG-GCGCCgCGUACGCgGCg -3'
miRNA:   3'- uaCAaaCUCCaCGCGG-GCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 121807 0.67 0.735082
Target:  5'- -----cGcGG-GCGCCUGCuCGCCGCc -3'
miRNA:   3'- uacaaaCuCCaCGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 121678 0.7 0.522836
Target:  5'- ----gUGGGGUGCgGCCCgagcagguGCGCGcCCGCu -3'
miRNA:   3'- uacaaACUCCACG-CGGG--------CGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 120445 0.66 0.791968
Target:  5'- -cGUUcGucAGcUGCGCCUGCuccauCGCCGCg -3'
miRNA:   3'- uaCAAaC--UCcACGCGGGCGu----GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 120097 0.67 0.735082
Target:  5'- -cGg--GAGauaaaGCGCCCGCGCGUCGg -3'
miRNA:   3'- uaCaaaCUCca---CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 119661 0.71 0.484107
Target:  5'- gAUGUUgGAGuaGUagcGCGUCUGCGCGCCGUg -3'
miRNA:   3'- -UACAAaCUC--CA---CGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 119112 0.68 0.654548
Target:  5'- ------cGGGUGCGCCCGgC-CGCUGUa -3'
miRNA:   3'- uacaaacUCCACGCGGGC-GuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 119044 0.69 0.62381
Target:  5'- cUGUggGAagcGGUaCGCCgGCACGCgCGCg -3'
miRNA:   3'- uACAaaCU---CCAcGCGGgCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 118968 0.68 0.644309
Target:  5'- -----cGAGGUGCGCUaCGCgacgaGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCGG-GCG-----UGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 118674 0.66 0.773488
Target:  5'- -----aGAGGUGU-CCgCGCucuGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCACGcGG-GCG---UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 117282 0.66 0.773488
Target:  5'- -cGUUUuGGG-GCGCCC-CGCGCC-Cg -3'
miRNA:   3'- uaCAAAcUCCaCGCGGGcGUGCGGcG- -5'
6345 5' -58.2 NC_001847.1 + 116809 0.67 0.744841
Target:  5'- -----cGAcGGUaacGCGCCUGCA-GCCGCg -3'
miRNA:   3'- uacaaaCU-CCA---CGCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 116213 0.7 0.522836
Target:  5'- cGUGUUUGAGGcaacgGgGCCUGCuC-CCGCg -3'
miRNA:   3'- -UACAAACUCCa----CgCGGGCGuGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 116156 0.69 0.582947
Target:  5'- -----cGAGGcgcugGCGgCCGCggGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCgGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 115856 0.67 0.725233
Target:  5'- -cGUUUGuuG-GCgGCCCGCcgcacagacgcuGCGCCGCc -3'
miRNA:   3'- uaCAAACucCaCG-CGGGCG------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 115266 0.67 0.744841
Target:  5'- ----------cGCGCCCGCcaGCGCCGCc -3'
miRNA:   3'- uacaaacuccaCGCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 114247 0.7 0.513034
Target:  5'- uGUGUUUugccgcugcGGGG-GCGUCCGCccaguauaaagaGCGCCGCc -3'
miRNA:   3'- -UACAAA---------CUCCaCGCGGGCG------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 114133 0.71 0.455983
Target:  5'- ------aGGGU-CGCCCGCACaGCCGCg -3'
miRNA:   3'- uacaaacUCCAcGCGGGCGUG-CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 113648 0.66 0.773488
Target:  5'- -----cGAGGcGCGCCCGgCAaauuccuuCGCCGUu -3'
miRNA:   3'- uacaaaCUCCaCGCGGGC-GU--------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.