miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 3067 0.65 0.798304
Target:  5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3'
miRNA:   3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 2147 0.65 0.798304
Target:  5'- -gGUUUGcgcugcgcagcaccAGGUcucgcaGCGCCCGCGcCGCCuggGCg -3'
miRNA:   3'- uaCAAAC--------------UCCA------CGCGGGCGU-GCGG---CG- -5'
6345 5' -58.2 NC_001847.1 + 105880 0.65 0.798304
Target:  5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3'
miRNA:   3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 41186 0.65 0.797403
Target:  5'- cGUGUUaaGAGG-GCGCCCagaaaagGCGCaguaucgcgagaauGCCGCa -3'
miRNA:   3'- -UACAAa-CUCCaCGCGGG-------CGUG--------------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 33859 0.66 0.791968
Target:  5'- -----aGAGGacUGCGCgCGCuucuugcaggagGCGCCGCc -3'
miRNA:   3'- uacaaaCUCC--ACGCGgGCG------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 49555 0.66 0.791968
Target:  5'- --cUUUGccGGcGCGCCCGUcgacgGCGCCGUu -3'
miRNA:   3'- uacAAACu-CCaCGCGGGCG-----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 12838 0.66 0.791968
Target:  5'- uUGg--GAGaUG-GCCgGUACGCCGCa -3'
miRNA:   3'- uACaaaCUCcACgCGGgCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 13345 0.66 0.791968
Target:  5'- -----cGAGcagGCGCCCGCGaggacgcuccaGCCGCg -3'
miRNA:   3'- uacaaaCUCca-CGCGGGCGUg----------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 49998 0.66 0.791968
Target:  5'- -----aGAGGa--GCCCGCGCGCC-Ca -3'
miRNA:   3'- uacaaaCUCCacgCGGGCGUGCGGcG- -5'
6345 5' -58.2 NC_001847.1 + 35454 0.66 0.791968
Target:  5'- -----cGGcGGccCGCgCCGCGCGCCGCa -3'
miRNA:   3'- uacaaaCU-CCacGCG-GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 53693 0.66 0.791968
Target:  5'- -----aGAuGUGCGCgCGCgagcGCGCCGCc -3'
miRNA:   3'- uacaaaCUcCACGCGgGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 88362 0.66 0.791968
Target:  5'- -----cGAGGgGCGCgCGgGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGgGCgUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 62359 0.66 0.791968
Target:  5'- -----cGGGGUGCaGcCCCGUGCGCaGCu -3'
miRNA:   3'- uacaaaCUCCACG-C-GGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 61825 0.66 0.791968
Target:  5'- ----aUGAGGUcgucgGCGUCCGacuCGCCGUc -3'
miRNA:   3'- uacaaACUCCA-----CGCGGGCgu-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 120445 0.66 0.791968
Target:  5'- -cGUUcGucAGcUGCGCCUGCuccauCGCCGCg -3'
miRNA:   3'- uaCAAaC--UCcACGCGGGCGu----GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 44931 0.66 0.791058
Target:  5'- cGUGUcgcuGGG-GCGCUCgggcugggcgacgGCGCGCCGCa -3'
miRNA:   3'- -UACAaac-UCCaCGCGGG-------------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 102228 0.66 0.790146
Target:  5'- -cGUcgGGcGGgacggcguccagGCGCUCGCGCGCgGCg -3'
miRNA:   3'- uaCAaaCU-CCa-----------CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 55914 0.66 0.782796
Target:  5'- -----cGGGGagcGCGCCCGUgauccgcggccgGCGUCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGGCG------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 81824 0.66 0.782796
Target:  5'- -----cGGGGcGCGCCgucuguCGCcCGCCGCa -3'
miRNA:   3'- uacaaaCUCCaCGCGG------GCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 80552 0.66 0.782796
Target:  5'- ------cGGGcGCGCgCCGCcaGCGCCGCc -3'
miRNA:   3'- uacaaacUCCaCGCG-GGCG--UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.