miRNA display CGI


Results 41 - 60 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 13041 0.67 0.677662
Target:  5'- gCGUCAgCGCCaacugcGUCUccucgUCGCcGGCGuCGCc -3'
miRNA:   3'- -GCAGUgGCGG------CAGA-----AGCGcCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 13111 0.78 0.175502
Target:  5'- uGUCGCgGCCGgggcgCGCGGGCgGCGCc -3'
miRNA:   3'- gCAGUGgCGGCagaa-GCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 13438 0.72 0.373385
Target:  5'- gGcCugCGCUGgCUguaucuaGCGGGCGCGCa -3'
miRNA:   3'- gCaGugGCGGCaGAag-----CGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 14115 0.69 0.559887
Target:  5'- aGUUGgCGCCGgaagCga-GCGGGCGUGUc -3'
miRNA:   3'- gCAGUgGCGGCa---GaagCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 14557 0.71 0.439668
Target:  5'- cCG-CGCCGCagcgCGggugCUg-GCGGGCGCGCg -3'
miRNA:   3'- -GCaGUGGCG----GCa---GAagCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 14643 0.67 0.638335
Target:  5'- gCGcUCGCgCGCCGcucgCUgcgaGCgGGGCGCGUg -3'
miRNA:   3'- -GC-AGUG-GCGGCa---GAag--CG-CCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 15022 0.66 0.687426
Target:  5'- gGUCGCgGCaauggcuugaGUCgccgacgCGCGGGCGCu- -3'
miRNA:   3'- gCAGUGgCGg---------CAGaa-----GCGCCCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 15218 0.7 0.466199
Target:  5'- uCGUCGCCGCgGUCga-GCuGGCGUcgGCc -3'
miRNA:   3'- -GCAGUGGCGgCAGaagCGcCCGCG--CG- -5'
6346 3' -60.6 NC_001847.1 + 15290 0.75 0.256465
Target:  5'- gGUaCGCCuGCUGgCUgcgCGCGGGCGUGCg -3'
miRNA:   3'- gCA-GUGG-CGGCaGAa--GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 15313 0.66 0.725977
Target:  5'- gCGUCggggGCCGCgGgCguagCGgGGGCGgGCg -3'
miRNA:   3'- -GCAG----UGGCGgCaGaa--GCgCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 15557 0.66 0.744835
Target:  5'- gCG-CGCgGCCGUCgggcCGCGGcCGcCGCu -3'
miRNA:   3'- -GCaGUGgCGGCAGaa--GCGCCcGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 16675 0.66 0.697148
Target:  5'- gCGUCGCgcaGCCuuggCUgCGCGGGCGaGCc -3'
miRNA:   3'- -GCAGUGg--CGGca--GAaGCGCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 16901 0.71 0.431017
Target:  5'- gCGUCGCCG--GUCUcgCGCGGGCGgGa -3'
miRNA:   3'- -GCAGUGGCggCAGAa-GCGCCCGCgCg -5'
6346 3' -60.6 NC_001847.1 + 17842 0.66 0.697148
Target:  5'- aCGUCGgCgaaacagagGUCGUCgggCGCGGG-GCGCc -3'
miRNA:   3'- -GCAGUgG---------CGGCAGaa-GCGCCCgCGCG- -5'
6346 3' -60.6 NC_001847.1 + 17866 0.69 0.53012
Target:  5'- aG-CGCCGCCGgg-UCGCccguccucgggcgGGGCGgGCg -3'
miRNA:   3'- gCaGUGGCGGCagaAGCG-------------CCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 18534 0.69 0.521583
Target:  5'- gCG-CGCCGCCGUCcgCGCcgcagagcGGCaGCGCu -3'
miRNA:   3'- -GCaGUGGCGGCAGaaGCGc-------CCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 18590 0.68 0.569593
Target:  5'- aCGUgCGCCauuagcgcGCCGUCcgcggCGuCGGcGCGCGCg -3'
miRNA:   3'- -GCA-GUGG--------CGGCAGaa---GC-GCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 18705 0.75 0.268503
Target:  5'- gCGUCACCGCCaG-CgcCGCGGGgaGCGCc -3'
miRNA:   3'- -GCAGUGGCGG-CaGaaGCGCCCg-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 19628 0.7 0.502811
Target:  5'- cCGgggCGCCGgCGUCggCGCGcGGC-CGCu -3'
miRNA:   3'- -GCa--GUGGCgGCAGaaGCGC-CCGcGCG- -5'
6346 3' -60.6 NC_001847.1 + 19667 0.67 0.628473
Target:  5'- ---gGCCGCCGgaaaCUgCGacCGGGUGCGCg -3'
miRNA:   3'- gcagUGGCGGCa---GAaGC--GCCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.