Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6346 | 5' | -59.2 | NC_001847.1 | + | 76027 | 0.66 | 0.722648 |
Target: 5'- -cGCGGCCgGaGCG--GCGGCGGcGa- -3' miRNA: 3'- uaCGCCGGgCaCGUuuUGCCGCC-Caa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 21744 | 0.66 | 0.722648 |
Target: 5'- -cGcCGGCCCGcGCGc-GCGGgGGGg- -3' miRNA: 3'- uaC-GCCGGGCaCGUuuUGCCgCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 103017 | 0.66 | 0.722648 |
Target: 5'- -gGCGGCgCCcaGCGccGGCGGCGGGc- -3' miRNA: 3'- uaCGCCG-GGcaCGUu-UUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 28540 | 0.66 | 0.722648 |
Target: 5'- --cCGGCCgCGUGCGcuucGGCGGCGcGGg- -3' miRNA: 3'- uacGCCGG-GCACGUu---UUGCCGC-CCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 58889 | 0.66 | 0.722648 |
Target: 5'- cUGCGGCaagcaCG-GCAAAugcgccGCgGGCGGGUg -3' miRNA: 3'- uACGCCGg----GCaCGUUU------UG-CCGCCCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 29046 | 0.66 | 0.722648 |
Target: 5'- -cGcCGGCagaCGUGCugcAGGCGGUGGGc- -3' miRNA: 3'- uaC-GCCGg--GCACGu--UUUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 124557 | 0.66 | 0.722648 |
Target: 5'- -cGcCGGCCCGcGCGc-GCGGgGGGg- -3' miRNA: 3'- uaC-GCCGGGCaCGUuuUGCCgCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 131353 | 0.66 | 0.722648 |
Target: 5'- --cCGGCCgCGUGCGcuucGGCGGCGcGGg- -3' miRNA: 3'- uacGCCGG-GCACGUu---UUGCCGC-CCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 129303 | 0.66 | 0.712649 |
Target: 5'- -gGCgGGCCUgGUGCAAGGCGggccugccgggcGCGGGg- -3' miRNA: 3'- uaCG-CCGGG-CACGUUUUGC------------CGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 8708 | 0.66 | 0.712649 |
Target: 5'- -cGaCGGCCaCG-GCuGGugGGCGGGg- -3' miRNA: 3'- uaC-GCCGG-GCaCGuUUugCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 10134 | 0.66 | 0.712649 |
Target: 5'- -aGCgGGCCCGgccGUAGcGCGaGCGGGa- -3' miRNA: 3'- uaCG-CCGGGCa--CGUUuUGC-CGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 85126 | 0.66 | 0.712649 |
Target: 5'- -gGCGcGCCCGggGCccagcAGGCGGUGGGc- -3' miRNA: 3'- uaCGC-CGGGCa-CGu----UUUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 26490 | 0.66 | 0.712649 |
Target: 5'- -gGCgGGCCUgGUGCAAGGCGggccugccgggcGCGGGg- -3' miRNA: 3'- uaCG-CCGGG-CACGUUUUGC------------CGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 61286 | 0.66 | 0.712649 |
Target: 5'- -cGCGcCCCGcGCAccGCGGCGGcGUUu -3' miRNA: 3'- uaCGCcGGGCaCGUuuUGCCGCC-CAA- -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 74652 | 0.66 | 0.712649 |
Target: 5'- -cGcCGGCCCGcGCGcgcacaAAGCGGCGGc-- -3' miRNA: 3'- uaC-GCCGGGCaCGU------UUUGCCGCCcaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 78332 | 0.66 | 0.712649 |
Target: 5'- -cGCgGGCCCGgcuuggGCGccGCGGCGGcGa- -3' miRNA: 3'- uaCG-CCGGGCa-----CGUuuUGCCGCC-Caa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 96298 | 0.66 | 0.712649 |
Target: 5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3' miRNA: 3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 96340 | 0.66 | 0.712649 |
Target: 5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3' miRNA: 3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 96382 | 0.66 | 0.712649 |
Target: 5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3' miRNA: 3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 12937 | 0.66 | 0.702581 |
Target: 5'- -cGCGuGUcgUCGUGCGgugGGGCGGCGGGc- -3' miRNA: 3'- uaCGC-CG--GGCACGU---UUUGCCGCCCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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