miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 28540 0.66 0.722648
Target:  5'- --cCGGCCgCGUGCGcuucGGCGGCGcGGg- -3'
miRNA:   3'- uacGCCGG-GCACGUu---UUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 124557 0.66 0.722648
Target:  5'- -cGcCGGCCCGcGCGc-GCGGgGGGg- -3'
miRNA:   3'- uaC-GCCGGGCaCGUuuUGCCgCCCaa -5'
6346 5' -59.2 NC_001847.1 + 131353 0.66 0.722648
Target:  5'- --cCGGCCgCGUGCGcuucGGCGGCGcGGg- -3'
miRNA:   3'- uacGCCGG-GCACGUu---UUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 58889 0.66 0.722648
Target:  5'- cUGCGGCaagcaCG-GCAAAugcgccGCgGGCGGGUg -3'
miRNA:   3'- uACGCCGg----GCaCGUUU------UG-CCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 29046 0.66 0.722648
Target:  5'- -cGcCGGCagaCGUGCugcAGGCGGUGGGc- -3'
miRNA:   3'- uaC-GCCGg--GCACGu--UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 76027 0.66 0.722648
Target:  5'- -cGCGGCCgGaGCG--GCGGCGGcGa- -3'
miRNA:   3'- uaCGCCGGgCaCGUuuUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 103017 0.66 0.722648
Target:  5'- -gGCGGCgCCcaGCGccGGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGcaCGUu-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 21744 0.66 0.722648
Target:  5'- -cGcCGGCCCGcGCGc-GCGGgGGGg- -3'
miRNA:   3'- uaC-GCCGGGCaCGUuuUGCCgCCCaa -5'
6346 5' -59.2 NC_001847.1 + 96340 0.66 0.712649
Target:  5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3'
miRNA:   3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 85126 0.66 0.712649
Target:  5'- -gGCGcGCCCGggGCccagcAGGCGGUGGGc- -3'
miRNA:   3'- uaCGC-CGGGCa-CGu----UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 8708 0.66 0.712649
Target:  5'- -cGaCGGCCaCG-GCuGGugGGCGGGg- -3'
miRNA:   3'- uaC-GCCGG-GCaCGuUUugCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 10134 0.66 0.712649
Target:  5'- -aGCgGGCCCGgccGUAGcGCGaGCGGGa- -3'
miRNA:   3'- uaCG-CCGGGCa--CGUUuUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 129303 0.66 0.712649
Target:  5'- -gGCgGGCCUgGUGCAAGGCGggccugccgggcGCGGGg- -3'
miRNA:   3'- uaCG-CCGGG-CACGUUUUGC------------CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 26490 0.66 0.712649
Target:  5'- -gGCgGGCCUgGUGCAAGGCGggccugccgggcGCGGGg- -3'
miRNA:   3'- uaCG-CCGGG-CACGUUUUGC------------CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 96382 0.66 0.712649
Target:  5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3'
miRNA:   3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 61286 0.66 0.712649
Target:  5'- -cGCGcCCCGcGCAccGCGGCGGcGUUu -3'
miRNA:   3'- uaCGCcGGGCaCGUuuUGCCGCC-CAA- -5'
6346 5' -59.2 NC_001847.1 + 74652 0.66 0.712649
Target:  5'- -cGcCGGCCCGcGCGcgcacaAAGCGGCGGc-- -3'
miRNA:   3'- uaC-GCCGGGCaCGU------UUUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 78332 0.66 0.712649
Target:  5'- -cGCgGGCCCGgcuuggGCGccGCGGCGGcGa- -3'
miRNA:   3'- uaCG-CCGGGCa-----CGUuuUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 96298 0.66 0.712649
Target:  5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3'
miRNA:   3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 61482 0.66 0.702581
Target:  5'- -cGCGucGCUgGcGCAcAGCGGCGGGUa -3'
miRNA:   3'- uaCGC--CGGgCaCGUuUUGCCGCCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.