miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 76350 0.7 0.67683
Target:  5'- -gGCGCAGGCGcUGuCCGUUCCUGc-- -3'
miRNA:   3'- cgCGCGUCUGC-ACuGGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 57792 0.7 0.67683
Target:  5'- cGCGuCGCAcGGCGUGucGCCGCCCa----- -3'
miRNA:   3'- -CGC-GCGU-CUGCAC--UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 85679 0.7 0.67683
Target:  5'- gGCGCGCAGGCGcucGCCGCCgUg---- -3'
miRNA:   3'- -CGCGCGUCUGCac-UGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 45527 0.7 0.67683
Target:  5'- gGCgGCGCGGACGgGGCCGUgCCg---- -3'
miRNA:   3'- -CG-CGCGUCUGCaCUGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 21357 0.69 0.686975
Target:  5'- uGCGCGCcgucGGCGgcucgGGCCGCCUCg---- -3'
miRNA:   3'- -CGCGCGu---CUGCa----CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 67285 0.69 0.70712
Target:  5'- cGCGCGgGGACuugGUGGCCGCggcgacggCCCUuuUUGg -3'
miRNA:   3'- -CGCGCgUCUG---CACUGGCG--------GGGAu-AAC- -5'
6348 5' -56.6 NC_001847.1 + 71106 0.69 0.716106
Target:  5'- aGCGCcCAGGCGUGAaccgcgggcaagcCCGUCCCg---- -3'
miRNA:   3'- -CGCGcGUCUGCACU-------------GGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 27699 0.69 0.717101
Target:  5'- gGCGCGCGagcgccGGCG-GGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGU------CUGCaCUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 104432 0.69 0.717101
Target:  5'- cCGCGCGGGCGUccaggagcgccgGGCUGCCCUc---- -3'
miRNA:   3'- cGCGCGUCUGCA------------CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 130868 0.69 0.717101
Target:  5'- gGCGCGCGccuCGUGGCCGCCaaagccgaCUGg-- -3'
miRNA:   3'- -CGCGCGUcu-GCACUGGCGGg-------GAUaac -5'
6348 5' -56.6 NC_001847.1 + 32828 0.69 0.717101
Target:  5'- aGCGCGCgAGgcccGCGUGGCCGCCg------ -3'
miRNA:   3'- -CGCGCG-UC----UGCACUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 83201 0.69 0.717101
Target:  5'- gGCGCGCAGACGa-GCUuggGCCCgUGUUu -3'
miRNA:   3'- -CGCGCGUCUGCacUGG---CGGGgAUAAc -5'
6348 5' -56.6 NC_001847.1 + 117410 0.69 0.717101
Target:  5'- uGCGCGCGGuggacgcuucGCGcGGCUGCgCCCUGg-- -3'
miRNA:   3'- -CGCGCGUC----------UGCaCUGGCG-GGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 8069 0.69 0.717101
Target:  5'- cGCGCGCAGAgGgggGcACCGCCgCg---- -3'
miRNA:   3'- -CGCGCGUCUgCa--C-UGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 130512 0.69 0.717101
Target:  5'- gGCGCGCGagcgccGGCG-GGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGU------CUGCaCUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 40779 0.69 0.72701
Target:  5'- cGCGCgGCAGACGccGCCGCgCCa---- -3'
miRNA:   3'- -CGCG-CGUCUGCacUGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 90739 0.69 0.72701
Target:  5'- cGCuCGCGGcGCGUGGCCggGCCCCg---- -3'
miRNA:   3'- -CGcGCGUC-UGCACUGG--CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 44048 0.69 0.736837
Target:  5'- gGCGCGCGu-CGgGGCCGCCCUg---- -3'
miRNA:   3'- -CGCGCGUcuGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 42958 0.69 0.736837
Target:  5'- cGCGCGCGGGgGgggcgGGCCGCCggCCg---- -3'
miRNA:   3'- -CGCGCGUCUgCa----CUGGCGG--GGauaac -5'
6348 5' -56.6 NC_001847.1 + 12762 0.69 0.736837
Target:  5'- aGCGCGCAGuCGccGGCCGUCCg----- -3'
miRNA:   3'- -CGCGCGUCuGCa-CUGGCGGGgauaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.