miRNA display CGI


Results 81 - 100 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 124547 0.76 0.243097
Target:  5'- cGCGGGCcgGCGcCGGCCCGcgcGCGcggggGGGCCg -3'
miRNA:   3'- -UGCCCG--CGC-GCCGGGUuu-UGU-----UCCGG- -5'
6349 3' -59 NC_001847.1 + 19352 0.76 0.243097
Target:  5'- cCGGGUcuuGCGCGcGCCCGAcgguGGcCAGGGCCg -3'
miRNA:   3'- uGCCCG---CGCGC-CGGGUU----UU-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 36488 0.76 0.243097
Target:  5'- cGCGGGCGCgugGCGGCCCuu--CuGGGCg -3'
miRNA:   3'- -UGCCCGCG---CGCCGGGuuuuGuUCCGg -5'
6349 3' -59 NC_001847.1 + 21734 0.76 0.243097
Target:  5'- cGCGGGCcgGCGcCGGCCCGcgcGCGcggggGGGCCg -3'
miRNA:   3'- -UGCCCG--CGC-GCCGGGUuu-UGU-----UCCGG- -5'
6349 3' -59 NC_001847.1 + 6745 0.76 0.248955
Target:  5'- aGCGGGCGUcgucugcgguGCGGCCgGu-GCGAGGCg -3'
miRNA:   3'- -UGCCCGCG----------CGCCGGgUuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 5063 0.76 0.248955
Target:  5'- cGCGGucGgGCGCGGCCCAGGAC--GGCg -3'
miRNA:   3'- -UGCC--CgCGCGCCGGGUUUUGuuCCGg -5'
6349 3' -59 NC_001847.1 + 80852 0.76 0.248955
Target:  5'- cCGGGCG-GCGGCgCGcguCGAGGCCg -3'
miRNA:   3'- uGCCCGCgCGCCGgGUuuuGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 115115 0.76 0.248955
Target:  5'- -aGGGCG-GCGGCC----GCAGGGCCg -3'
miRNA:   3'- ugCCCGCgCGCCGGguuuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 79237 0.76 0.25493
Target:  5'- cACGGGCGCGCucCCCGAGcugcuagccgGCGucGGGCCg -3'
miRNA:   3'- -UGCCCGCGCGccGGGUUU----------UGU--UCCGG- -5'
6349 3' -59 NC_001847.1 + 21870 0.76 0.25493
Target:  5'- uGCGGGgGCuGCGGCgCGcuGcCGAGGCCg -3'
miRNA:   3'- -UGCCCgCG-CGCCGgGUuuU-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 23786 0.76 0.25493
Target:  5'- cCGGGCGCGaggucGCCCAGcGCGGcGGCCa -3'
miRNA:   3'- uGCCCGCGCgc---CGGGUUuUGUU-CCGG- -5'
6349 3' -59 NC_001847.1 + 53741 0.76 0.25493
Target:  5'- cGCGcGGCGUagcgcggauccgGCGGCCCGAGGCGgcgaGGGCg -3'
miRNA:   3'- -UGC-CCGCG------------CGCCGGGUUUUGU----UCCGg -5'
6349 3' -59 NC_001847.1 + 134132 0.76 0.25493
Target:  5'- cGCGGGCG-GCGGCCUgguGGAGCGcGuGCCg -3'
miRNA:   3'- -UGCCCGCgCGCCGGG---UUUUGUuC-CGG- -5'
6349 3' -59 NC_001847.1 + 31319 0.76 0.25493
Target:  5'- cGCGGGCG-GCGGCCUgguGGAGCGcGuGCCg -3'
miRNA:   3'- -UGCCCGCgCGCCGGG---UUUUGUuC-CGG- -5'
6349 3' -59 NC_001847.1 + 100884 0.75 0.261022
Target:  5'- gGCaGGgGCGCGGCCggcggGAGACGGGGUCg -3'
miRNA:   3'- -UGcCCgCGCGCCGGg----UUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 75494 0.75 0.261022
Target:  5'- gGCGGGCGCGagcgGGCUCAaaaGAGCGcGGUCg -3'
miRNA:   3'- -UGCCCGCGCg---CCGGGU---UUUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 52413 0.75 0.261022
Target:  5'- cGCGGGCgGCGCGcgcugucgaGCUCGAAGCG-GGCCc -3'
miRNA:   3'- -UGCCCG-CGCGC---------CGGGUUUUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 82904 0.75 0.263492
Target:  5'- cCGcGGCGCGCGgcGCCCGGGGgcuuuuucucgcuguCGAGGCCg -3'
miRNA:   3'- uGC-CCGCGCGC--CGGGUUUU---------------GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 86994 0.75 0.266606
Target:  5'- cCGGcGCGCGcCGGCCCG--GCGguuaccuGGGCCg -3'
miRNA:   3'- uGCC-CGCGC-GCCGGGUuuUGU-------UCCGG- -5'
6349 3' -59 NC_001847.1 + 56318 0.75 0.267232
Target:  5'- gGCGGGCGCGCgaaGGCCguaAAGGCGaagGGGUCc -3'
miRNA:   3'- -UGCCCGCGCG---CCGGg--UUUUGU---UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.