miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 5' -56.6 NC_001847.1 + 80539 0.66 0.887337
Target:  5'- gUCGGcaUCGGCgcgggCGCGCG-CCGCCa- -3'
miRNA:   3'- -AGUCacAGCUGa----GCGUGCuGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 29364 0.66 0.85048
Target:  5'- aCAGcGgCGAC-CGCGCGGCgGCCg- -3'
miRNA:   3'- aGUCaCaGCUGaGCGUGCUGgCGGac -5'
6349 5' -56.6 NC_001847.1 + 99211 0.66 0.85827
Target:  5'- cCAGg--CGcaaGCgCGCGCGACCGCCg- -3'
miRNA:   3'- aGUCacaGC---UGaGCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 52500 0.66 0.887337
Target:  5'- -uGGUGgagcUGACggagCGCGCGGCCGCg-- -3'
miRNA:   3'- agUCACa---GCUGa---GCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 79377 0.66 0.880395
Target:  5'- gCuGUG-CGGCagCGCGCGGCuCGCCg- -3'
miRNA:   3'- aGuCACaGCUGa-GCGUGCUG-GCGGac -5'
6349 5' -56.6 NC_001847.1 + 130245 0.66 0.873233
Target:  5'- gUCGGUGUCG-UUCGCAgCGGCgCGggggcCCUGc -3'
miRNA:   3'- -AGUCACAGCuGAGCGU-GCUG-GC-----GGAC- -5'
6349 5' -56.6 NC_001847.1 + 116960 0.66 0.865856
Target:  5'- gCGGUGcucCGGCUgcccugcgaCGC-CGACCGCCUc -3'
miRNA:   3'- aGUCACa--GCUGA---------GCGuGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 85292 0.66 0.85048
Target:  5'- aUCuuGUGg-GACagcagcaGCACGGCCGCCUGc -3'
miRNA:   3'- -AGu-CACagCUGag-----CGUGCUGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 57559 0.66 0.872505
Target:  5'- -gGGUGccgccgugcgagcUCGGCcCGCGCGGCCGCg-- -3'
miRNA:   3'- agUCAC-------------AGCUGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 106293 0.66 0.873233
Target:  5'- cCGGcGUCG-CgCGCGCGGCCGCg-- -3'
miRNA:   3'- aGUCaCAGCuGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 96864 0.66 0.887337
Target:  5'- gCGGUGggCGGCggucCGCGCuggggaggGACCGCCg- -3'
miRNA:   3'- aGUCACa-GCUGa---GCGUG--------CUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 62135 0.66 0.85827
Target:  5'- gUCuGUGagCGGCgugCGCAUGGCCGCg-- -3'
miRNA:   3'- -AGuCACa-GCUGa--GCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 97321 0.66 0.865856
Target:  5'- gCAGgcgcGUCGGCgUCGCGCccgcccGGCCGCgUGu -3'
miRNA:   3'- aGUCa---CAGCUG-AGCGUG------CUGGCGgAC- -5'
6349 5' -56.6 NC_001847.1 + 27432 0.66 0.873233
Target:  5'- gUCGGUGUCG-UUCGCAgCGGCgCGggggcCCUGc -3'
miRNA:   3'- -AGUCACAGCuGAGCGU-GCUG-GC-----GGAC- -5'
6349 5' -56.6 NC_001847.1 + 30524 0.67 0.817418
Target:  5'- aCAGUGcCGGCgaGCGCGACguCGCCg- -3'
miRNA:   3'- aGUCACaGCUGagCGUGCUG--GCGGac -5'
6349 5' -56.6 NC_001847.1 + 35445 0.67 0.834315
Target:  5'- aCGGUG-CGGCgCGaCGCGGCCGCg-- -3'
miRNA:   3'- aGUCACaGCUGaGC-GUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 73676 0.67 0.825954
Target:  5'- cCAGcGacgCGGCgcugcUGCGCGACCGCCUc -3'
miRNA:   3'- aGUCaCa--GCUGa----GCGUGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 128441 0.67 0.834315
Target:  5'- aCAGUGcgcUCGGCccugCGCGCGcgcccggccgGCCGCCg- -3'
miRNA:   3'- aGUCAC---AGCUGa---GCGUGC----------UGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 36943 0.67 0.834315
Target:  5'- cCGGagcuccgCGGCcgUCGCACGGCUGCCUa -3'
miRNA:   3'- aGUCaca----GCUG--AGCGUGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 67925 0.67 0.808713
Target:  5'- aCGGcGuUCGAC-CGCGCGcCCGCCg- -3'
miRNA:   3'- aGUCaC-AGCUGaGCGUGCuGGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.