miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 5' -56.6 NC_001847.1 + 32895 0.72 0.542282
Target:  5'- aCGGUG-CGcGCcgCGCGCGAgCGCCUGg -3'
miRNA:   3'- aGUCACaGC-UGa-GCGUGCUgGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 130245 0.66 0.873233
Target:  5'- gUCGGUGUCG-UUCGCAgCGGCgCGggggcCCUGc -3'
miRNA:   3'- -AGUCACAGCuGAGCGU-GCUG-GC-----GGAC- -5'
6349 5' -56.6 NC_001847.1 + 52500 0.66 0.887337
Target:  5'- -uGGUGgagcUGACggagCGCGCGGCCGCg-- -3'
miRNA:   3'- agUCACa---GCUGa---GCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 96864 0.66 0.887337
Target:  5'- gCGGUGggCGGCggucCGCGCuggggaggGACCGCCg- -3'
miRNA:   3'- aGUCACa-GCUGa---GCGUG--------CUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 35932 0.69 0.704371
Target:  5'- --uGUGgCGGCgcgccgcCGCGCGGCCGCCUc -3'
miRNA:   3'- aguCACaGCUGa------GCGUGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 53712 0.69 0.734068
Target:  5'- gUCuGUGggccggCGGCUgGCGCuGugCGCCUGc -3'
miRNA:   3'- -AGuCACa-----GCUGAgCGUG-CugGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 134644 0.68 0.79985
Target:  5'- aCAGggggGUUGg--CGCGCGGCCGCCc- -3'
miRNA:   3'- aGUCa---CAGCugaGCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 42253 0.68 0.803414
Target:  5'- gUCGGUGgugggcagcagcaccUCGAgCUCGCGCGG-CGCCa- -3'
miRNA:   3'- -AGUCAC---------------AGCU-GAGCGUGCUgGCGGac -5'
6349 5' -56.6 NC_001847.1 + 73676 0.67 0.825954
Target:  5'- cCAGcGacgCGGCgcugcUGCGCGACCGCCUc -3'
miRNA:   3'- aGUCaCa--GCUGa----GCGUGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 116960 0.66 0.865856
Target:  5'- gCGGUGcucCGGCUgcccugcgaCGC-CGACCGCCUc -3'
miRNA:   3'- aGUCACa--GCUGA---------GCGuGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 29364 0.66 0.85048
Target:  5'- aCAGcGgCGAC-CGCGCGGCgGCCg- -3'
miRNA:   3'- aGUCaCaGCUGaGCGUGCUGgCGGac -5'
6349 5' -56.6 NC_001847.1 + 98925 0.67 0.817418
Target:  5'- -gAGUGUCGGCaaGCAC--CCGCCUu -3'
miRNA:   3'- agUCACAGCUGagCGUGcuGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 19636 0.71 0.582432
Target:  5'- cCGGcGUCGg--CGCGCGGCCGCUUGc -3'
miRNA:   3'- aGUCaCAGCugaGCGUGCUGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 85292 0.66 0.85048
Target:  5'- aUCuuGUGg-GACagcagcaGCACGGCCGCCUGc -3'
miRNA:   3'- -AGu-CACagCUGag-----CGUGCUGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 55741 0.71 0.602746
Target:  5'- aCGGUGgucCGGCUCGCgcccgcGCGGCCGugcCCUGa -3'
miRNA:   3'- aGUCACa--GCUGAGCG------UGCUGGC---GGAC- -5'
6349 5' -56.6 NC_001847.1 + 30524 0.67 0.817418
Target:  5'- aCAGUGcCGGCgaGCGCGACguCGCCg- -3'
miRNA:   3'- aGUCACaGCUGagCGUGCUG--GCGGac -5'
6349 5' -56.6 NC_001847.1 + 99211 0.66 0.85827
Target:  5'- cCAGg--CGcaaGCgCGCGCGACCGCCg- -3'
miRNA:   3'- aGUCacaGC---UGaGCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 79377 0.66 0.880395
Target:  5'- gCuGUG-CGGCagCGCGCGGCuCGCCg- -3'
miRNA:   3'- aGuCACaGCUGa-GCGUGCUG-GCGGac -5'
6349 5' -56.6 NC_001847.1 + 28830 0.7 0.673112
Target:  5'- gCGGUGgugCGGCUgcuagaaCGCGCGGCCGCg-- -3'
miRNA:   3'- aGUCACa--GCUGA-------GCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 64110 0.68 0.781678
Target:  5'- --cGUGUCcgcggcgccaGACgcgUGCGCGGCCGCCg- -3'
miRNA:   3'- aguCACAG----------CUGa--GCGUGCUGGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.