Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 99211 | 0.66 | 0.85827 |
Target: 5'- cCAGg--CGcaaGCgCGCGCGACCGCCg- -3' miRNA: 3'- aGUCacaGC---UGaGCGUGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 131009 | 1.08 | 0.002782 |
Target: 5'- cUCAGUGUCGACUCGCACGACCGCCUGu -3' miRNA: 3'- -AGUCACAGCUGAGCGUGCUGGCGGAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 62135 | 0.66 | 0.85827 |
Target: 5'- gUCuGUGagCGGCgugCGCAUGGCCGCg-- -3' miRNA: 3'- -AGuCACa-GCUGa--GCGUGCUGGCGgac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 101560 | 0.77 | 0.315902 |
Target: 5'- gCAGgacgucGUCGGCaccgCGCACGGCCGCCUc -3' miRNA: 3'- aGUCa-----CAGCUGa---GCGUGCUGGCGGAc -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 66349 | 0.75 | 0.385804 |
Target: 5'- ----cGUCGgcccGCUCGCGCGGCCGCCg- -3' miRNA: 3'- agucaCAGC----UGAGCGUGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 131805 | 0.71 | 0.631317 |
Target: 5'- gCAGcGUCGGCauaacgcaccccUGCGCGGCCGCCUa -3' miRNA: 3'- aGUCaCAGCUGa-----------GCGUGCUGGCGGAc -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 97321 | 0.66 | 0.865856 |
Target: 5'- gCAGgcgcGUCGGCgUCGCGCccgcccGGCCGCgUGu -3' miRNA: 3'- aGUCa---CAGCUG-AGCGUG------CUGGCGgAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 87566 | 0.67 | 0.834315 |
Target: 5'- cCGGccuuccUCGGCgcgUGCGCGGCCGCCg- -3' miRNA: 3'- aGUCac----AGCUGa--GCGUGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 67925 | 0.67 | 0.808713 |
Target: 5'- aCGGcGuUCGAC-CGCGCGcCCGCCg- -3' miRNA: 3'- aGUCaC-AGCUGaGCGUGCuGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 112456 | 0.68 | 0.79985 |
Target: 5'- ----cGUCGAgUacaGCGCgGACCGCCUGc -3' miRNA: 3'- agucaCAGCUgAg--CGUG-CUGGCGGAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 51028 | 0.68 | 0.79985 |
Target: 5'- gCGGcaUCGGCU-GCACGacGCCGCCUGu -3' miRNA: 3'- aGUCacAGCUGAgCGUGC--UGGCGGAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 31831 | 0.68 | 0.79985 |
Target: 5'- aCAGggggGUUGg--CGCGCGGCCGCCc- -3' miRNA: 3'- aGUCa---CAGCugaGCGUGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 81387 | 0.68 | 0.790835 |
Target: 5'- cUCGGUG-CGcACUCGCAgCuGCCGCgUGa -3' miRNA: 3'- -AGUCACaGC-UGAGCGU-GcUGGCGgAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 65504 | 0.68 | 0.762972 |
Target: 5'- gCGGUGUggggCGGCgcgCGCaguGCGGCCGCCc- -3' miRNA: 3'- aGUCACA----GCUGa--GCG---UGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 73191 | 0.69 | 0.743803 |
Target: 5'- gCGGaGUCGGCcCGCGCGggccgcGCCGCCg- -3' miRNA: 3'- aGUCaCAGCUGaGCGUGC------UGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 57889 | 0.69 | 0.724245 |
Target: 5'- -gGGUGUCGcccgccagcGCcCGCGCGACCGCg-- -3' miRNA: 3'- agUCACAGC---------UGaGCGUGCUGGCGgac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 134504 | 0.69 | 0.714343 |
Target: 5'- gUAGUGUgGGC-CGUGCGGCCGCg-- -3' miRNA: 3'- aGUCACAgCUGaGCGUGCUGGCGgac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 102541 | 0.7 | 0.674127 |
Target: 5'- cUCcGUGUCGGC-CGCgACGGCgGCCg- -3' miRNA: 3'- -AGuCACAGCUGaGCG-UGCUGgCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 58237 | 0.7 | 0.653778 |
Target: 5'- gCGGcagCGGCggCGCGCGACCGCCc- -3' miRNA: 3'- aGUCacaGCUGa-GCGUGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 19502 | 0.71 | 0.633361 |
Target: 5'- gUCGG-GUCGugUCGCGgGAUCGCgCUu -3' miRNA: 3'- -AGUCaCAGCugAGCGUgCUGGCG-GAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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