miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 5' -56.6 NC_001847.1 + 102541 0.7 0.674127
Target:  5'- cUCcGUGUCGGC-CGCgACGGCgGCCg- -3'
miRNA:   3'- -AGuCACAGCUGaGCG-UGCUGgCGGac -5'
6349 5' -56.6 NC_001847.1 + 31831 0.68 0.79985
Target:  5'- aCAGggggGUUGg--CGCGCGGCCGCCc- -3'
miRNA:   3'- aGUCa---CAGCugaGCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 81387 0.68 0.790835
Target:  5'- cUCGGUG-CGcACUCGCAgCuGCCGCgUGa -3'
miRNA:   3'- -AGUCACaGC-UGAGCGU-GcUGGCGgAC- -5'
6349 5' -56.6 NC_001847.1 + 65504 0.68 0.762972
Target:  5'- gCGGUGUggggCGGCgcgCGCaguGCGGCCGCCc- -3'
miRNA:   3'- aGUCACA----GCUGa--GCG---UGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 47867 0.68 0.762972
Target:  5'- gCGGgccGUCGGCgCGCACGuCCGCgaGa -3'
miRNA:   3'- aGUCa--CAGCUGaGCGUGCuGGCGgaC- -5'
6349 5' -56.6 NC_001847.1 + 120121 0.68 0.75344
Target:  5'- cCGGcGgccgCGGCUCGCGCGGCC-CCa- -3'
miRNA:   3'- aGUCaCa---GCUGAGCGUGCUGGcGGac -5'
6349 5' -56.6 NC_001847.1 + 73191 0.69 0.743803
Target:  5'- gCGGaGUCGGCcCGCGCGggccgcGCCGCCg- -3'
miRNA:   3'- aGUCaCAGCUGaGCGUGC------UGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 57889 0.69 0.724245
Target:  5'- -gGGUGUCGcccgccagcGCcCGCGCGACCGCg-- -3'
miRNA:   3'- agUCACAGC---------UGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 134504 0.69 0.714343
Target:  5'- gUAGUGUgGGC-CGUGCGGCCGCg-- -3'
miRNA:   3'- aGUCACAgCUGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 51028 0.68 0.79985
Target:  5'- gCGGcaUCGGCU-GCACGacGCCGCCUGu -3'
miRNA:   3'- aGUCacAGCUGAgCGUGC--UGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 112456 0.68 0.79985
Target:  5'- ----cGUCGAgUacaGCGCgGACCGCCUGc -3'
miRNA:   3'- agucaCAGCUgAg--CGUG-CUGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 67925 0.67 0.808713
Target:  5'- aCGGcGuUCGAC-CGCGCGcCCGCCg- -3'
miRNA:   3'- aGUCaC-AGCUGaGCGUGCuGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 106293 0.66 0.873233
Target:  5'- cCGGcGUCG-CgCGCGCGGCCGCg-- -3'
miRNA:   3'- aGUCaCAGCuGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 27432 0.66 0.873233
Target:  5'- gUCGGUGUCG-UUCGCAgCGGCgCGggggcCCUGc -3'
miRNA:   3'- -AGUCACAGCuGAGCGU-GCUG-GC-----GGAC- -5'
6349 5' -56.6 NC_001847.1 + 57559 0.66 0.872505
Target:  5'- -gGGUGccgccgugcgagcUCGGCcCGCGCGGCCGCg-- -3'
miRNA:   3'- agUCAC-------------AGCUGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 97321 0.66 0.865856
Target:  5'- gCAGgcgcGUCGGCgUCGCGCccgcccGGCCGCgUGu -3'
miRNA:   3'- aGUCa---CAGCUG-AGCGUG------CUGGCGgAC- -5'
6349 5' -56.6 NC_001847.1 + 62135 0.66 0.85827
Target:  5'- gUCuGUGagCGGCgugCGCAUGGCCGCg-- -3'
miRNA:   3'- -AGuCACa-GCUGa--GCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 87566 0.67 0.834315
Target:  5'- cCGGccuuccUCGGCgcgUGCGCGGCCGCCg- -3'
miRNA:   3'- aGUCac----AGCUGa--GCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 36943 0.67 0.834315
Target:  5'- cCGGagcuccgCGGCcgUCGCACGGCUGCCUa -3'
miRNA:   3'- aGUCaca----GCUG--AGCGUGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 128441 0.67 0.834315
Target:  5'- aCAGUGcgcUCGGCccugCGCGCGcgcccggccgGCCGCCg- -3'
miRNA:   3'- aGUCAC---AGCUGa---GCGUGC----------UGGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.