miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 5' -56.6 NC_001847.1 + 98925 0.67 0.817418
Target:  5'- -gAGUGUCGGCaaGCAC--CCGCCUu -3'
miRNA:   3'- agUCACAGCUGagCGUGcuGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 67925 0.67 0.808713
Target:  5'- aCGGcGuUCGAC-CGCGCGcCCGCCg- -3'
miRNA:   3'- aGUCaC-AGCUGaGCGUGCuGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 42253 0.68 0.803414
Target:  5'- gUCGGUGgugggcagcagcaccUCGAgCUCGCGCGG-CGCCa- -3'
miRNA:   3'- -AGUCAC---------------AGCU-GAGCGUGCUgGCGGac -5'
6349 5' -56.6 NC_001847.1 + 31831 0.68 0.79985
Target:  5'- aCAGggggGUUGg--CGCGCGGCCGCCc- -3'
miRNA:   3'- aGUCa---CAGCugaGCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 112456 0.68 0.79985
Target:  5'- ----cGUCGAgUacaGCGCgGACCGCCUGc -3'
miRNA:   3'- agucaCAGCUgAg--CGUG-CUGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 134644 0.68 0.79985
Target:  5'- aCAGggggGUUGg--CGCGCGGCCGCCc- -3'
miRNA:   3'- aGUCa---CAGCugaGCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 51028 0.68 0.79985
Target:  5'- gCGGcaUCGGCU-GCACGacGCCGCCUGu -3'
miRNA:   3'- aGUCacAGCUGAgCGUGC--UGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 81387 0.68 0.790835
Target:  5'- cUCGGUG-CGcACUCGCAgCuGCCGCgUGa -3'
miRNA:   3'- -AGUCACaGC-UGAGCGU-GcUGGCGgAC- -5'
6349 5' -56.6 NC_001847.1 + 64110 0.68 0.781678
Target:  5'- --cGUGUCcgcggcgccaGACgcgUGCGCGGCCGCCg- -3'
miRNA:   3'- aguCACAG----------CUGa--GCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 47867 0.68 0.762972
Target:  5'- gCGGgccGUCGGCgCGCACGuCCGCgaGa -3'
miRNA:   3'- aGUCa--CAGCUGaGCGUGCuGGCGgaC- -5'
6349 5' -56.6 NC_001847.1 + 65504 0.68 0.762972
Target:  5'- gCGGUGUggggCGGCgcgCGCaguGCGGCCGCCc- -3'
miRNA:   3'- aGUCACA----GCUGa--GCG---UGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 120121 0.68 0.75344
Target:  5'- cCGGcGgccgCGGCUCGCGCGGCC-CCa- -3'
miRNA:   3'- aGUCaCa---GCUGAGCGUGCUGGcGGac -5'
6349 5' -56.6 NC_001847.1 + 73191 0.69 0.743803
Target:  5'- gCGGaGUCGGCcCGCGCGggccgcGCCGCCg- -3'
miRNA:   3'- aGUCaCAGCUGaGCGUGC------UGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 53712 0.69 0.734068
Target:  5'- gUCuGUGggccggCGGCUgGCGCuGugCGCCUGc -3'
miRNA:   3'- -AGuCACa-----GCUGAgCGUG-CugGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 57889 0.69 0.724245
Target:  5'- -gGGUGUCGcccgccagcGCcCGCGCGACCGCg-- -3'
miRNA:   3'- agUCACAGC---------UGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 134504 0.69 0.714343
Target:  5'- gUAGUGUgGGC-CGUGCGGCCGCg-- -3'
miRNA:   3'- aGUCACAgCUGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 35932 0.69 0.704371
Target:  5'- --uGUGgCGGCgcgccgcCGCGCGGCCGCCUc -3'
miRNA:   3'- aguCACaGCUGa------GCGUGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 102541 0.7 0.674127
Target:  5'- cUCcGUGUCGGC-CGCgACGGCgGCCg- -3'
miRNA:   3'- -AGuCACAGCUGaGCG-UGCUGgCGGac -5'
6349 5' -56.6 NC_001847.1 + 28830 0.7 0.673112
Target:  5'- gCGGUGgugCGGCUgcuagaaCGCGCGGCCGCg-- -3'
miRNA:   3'- aGUCACa--GCUGA-------GCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 58237 0.7 0.653778
Target:  5'- gCGGcagCGGCggCGCGCGACCGCCc- -3'
miRNA:   3'- aGUCacaGCUGa-GCGUGCUGGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.