Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 79377 | 0.66 | 0.880395 |
Target: 5'- gCuGUG-CGGCagCGCGCGGCuCGCCg- -3' miRNA: 3'- aGuCACaGCUGa-GCGUGCUG-GCGGac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 73676 | 0.67 | 0.825954 |
Target: 5'- cCAGcGacgCGGCgcugcUGCGCGACCGCCUc -3' miRNA: 3'- aGUCaCa--GCUGa----GCGUGCUGGCGGAc -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 73191 | 0.69 | 0.743803 |
Target: 5'- gCGGaGUCGGCcCGCGCGggccgcGCCGCCg- -3' miRNA: 3'- aGUCaCAGCUGaGCGUGC------UGGCGGac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 67925 | 0.67 | 0.808713 |
Target: 5'- aCGGcGuUCGAC-CGCGCGcCCGCCg- -3' miRNA: 3'- aGUCaC-AGCUGaGCGUGCuGGCGGac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 66349 | 0.75 | 0.385804 |
Target: 5'- ----cGUCGgcccGCUCGCGCGGCCGCCg- -3' miRNA: 3'- agucaCAGC----UGAGCGUGCUGGCGGac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 65504 | 0.68 | 0.762972 |
Target: 5'- gCGGUGUggggCGGCgcgCGCaguGCGGCCGCCc- -3' miRNA: 3'- aGUCACA----GCUGa--GCG---UGCUGGCGGac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 64110 | 0.68 | 0.781678 |
Target: 5'- --cGUGUCcgcggcgccaGACgcgUGCGCGGCCGCCg- -3' miRNA: 3'- aguCACAG----------CUGa--GCGUGCUGGCGGac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 62135 | 0.66 | 0.85827 |
Target: 5'- gUCuGUGagCGGCgugCGCAUGGCCGCg-- -3' miRNA: 3'- -AGuCACa-GCUGa--GCGUGCUGGCGgac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 58237 | 0.7 | 0.653778 |
Target: 5'- gCGGcagCGGCggCGCGCGACCGCCc- -3' miRNA: 3'- aGUCacaGCUGa-GCGUGCUGGCGGac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 57889 | 0.69 | 0.724245 |
Target: 5'- -gGGUGUCGcccgccagcGCcCGCGCGACCGCg-- -3' miRNA: 3'- agUCACAGC---------UGaGCGUGCUGGCGgac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 57559 | 0.66 | 0.872505 |
Target: 5'- -gGGUGccgccgugcgagcUCGGCcCGCGCGGCCGCg-- -3' miRNA: 3'- agUCAC-------------AGCUGaGCGUGCUGGCGgac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 55741 | 0.71 | 0.602746 |
Target: 5'- aCGGUGgucCGGCUCGCgcccgcGCGGCCGugcCCUGa -3' miRNA: 3'- aGUCACa--GCUGAGCG------UGCUGGC---GGAC- -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 53712 | 0.69 | 0.734068 |
Target: 5'- gUCuGUGggccggCGGCUgGCGCuGugCGCCUGc -3' miRNA: 3'- -AGuCACa-----GCUGAgCGUG-CugGCGGAC- -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 52500 | 0.66 | 0.887337 |
Target: 5'- -uGGUGgagcUGACggagCGCGCGGCCGCg-- -3' miRNA: 3'- agUCACa---GCUGa---GCGUGCUGGCGgac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 51028 | 0.68 | 0.79985 |
Target: 5'- gCGGcaUCGGCU-GCACGacGCCGCCUGu -3' miRNA: 3'- aGUCacAGCUGAgCGUGC--UGGCGGAC- -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 47867 | 0.68 | 0.762972 |
Target: 5'- gCGGgccGUCGGCgCGCACGuCCGCgaGa -3' miRNA: 3'- aGUCa--CAGCUGaGCGUGCuGGCGgaC- -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 42253 | 0.68 | 0.803414 |
Target: 5'- gUCGGUGgugggcagcagcaccUCGAgCUCGCGCGG-CGCCa- -3' miRNA: 3'- -AGUCAC---------------AGCU-GAGCGUGCUgGCGGac -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 36943 | 0.67 | 0.834315 |
Target: 5'- cCGGagcuccgCGGCcgUCGCACGGCUGCCUa -3' miRNA: 3'- aGUCaca----GCUG--AGCGUGCUGGCGGAc -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 35932 | 0.69 | 0.704371 |
Target: 5'- --uGUGgCGGCgcgccgcCGCGCGGCCGCCUc -3' miRNA: 3'- aguCACaGCUGa------GCGUGCUGGCGGAc -5' |
|||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 35445 | 0.67 | 0.834315 |
Target: 5'- aCGGUG-CGGCgCGaCGCGGCCGCg-- -3' miRNA: 3'- aGUCACaGCUGaGC-GUGCUGGCGgac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home