miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 5' -56.6 NC_001847.1 + 134644 0.68 0.79985
Target:  5'- aCAGggggGUUGg--CGCGCGGCCGCCc- -3'
miRNA:   3'- aGUCa---CAGCugaGCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 134504 0.69 0.714343
Target:  5'- gUAGUGUgGGC-CGUGCGGCCGCg-- -3'
miRNA:   3'- aGUCACAgCUGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 131805 0.71 0.631317
Target:  5'- gCAGcGUCGGCauaacgcaccccUGCGCGGCCGCCUa -3'
miRNA:   3'- aGUCaCAGCUGa-----------GCGUGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 131009 1.08 0.002782
Target:  5'- cUCAGUGUCGACUCGCACGACCGCCUGu -3'
miRNA:   3'- -AGUCACAGCUGAGCGUGCUGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 130245 0.66 0.873233
Target:  5'- gUCGGUGUCG-UUCGCAgCGGCgCGggggcCCUGc -3'
miRNA:   3'- -AGUCACAGCuGAGCGU-GCUG-GC-----GGAC- -5'
6349 5' -56.6 NC_001847.1 + 128441 0.67 0.834315
Target:  5'- aCAGUGcgcUCGGCccugCGCGCGcgcccggccgGCCGCCg- -3'
miRNA:   3'- aGUCAC---AGCUGa---GCGUGC----------UGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 120121 0.68 0.75344
Target:  5'- cCGGcGgccgCGGCUCGCGCGGCC-CCa- -3'
miRNA:   3'- aGUCaCa---GCUGAGCGUGCUGGcGGac -5'
6349 5' -56.6 NC_001847.1 + 116960 0.66 0.865856
Target:  5'- gCGGUGcucCGGCUgcccugcgaCGC-CGACCGCCUc -3'
miRNA:   3'- aGUCACa--GCUGA---------GCGuGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 112456 0.68 0.79985
Target:  5'- ----cGUCGAgUacaGCGCgGACCGCCUGc -3'
miRNA:   3'- agucaCAGCUgAg--CGUG-CUGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 106293 0.66 0.873233
Target:  5'- cCGGcGUCG-CgCGCGCGGCCGCg-- -3'
miRNA:   3'- aGUCaCAGCuGaGCGUGCUGGCGgac -5'
6349 5' -56.6 NC_001847.1 + 102541 0.7 0.674127
Target:  5'- cUCcGUGUCGGC-CGCgACGGCgGCCg- -3'
miRNA:   3'- -AGuCACAGCUGaGCG-UGCUGgCGGac -5'
6349 5' -56.6 NC_001847.1 + 101560 0.77 0.315902
Target:  5'- gCAGgacgucGUCGGCaccgCGCACGGCCGCCUc -3'
miRNA:   3'- aGUCa-----CAGCUGa---GCGUGCUGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 99211 0.66 0.85827
Target:  5'- cCAGg--CGcaaGCgCGCGCGACCGCCg- -3'
miRNA:   3'- aGUCacaGC---UGaGCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 98925 0.67 0.817418
Target:  5'- -gAGUGUCGGCaaGCAC--CCGCCUu -3'
miRNA:   3'- agUCACAGCUGagCGUGcuGGCGGAc -5'
6349 5' -56.6 NC_001847.1 + 97321 0.66 0.865856
Target:  5'- gCAGgcgcGUCGGCgUCGCGCccgcccGGCCGCgUGu -3'
miRNA:   3'- aGUCa---CAGCUG-AGCGUG------CUGGCGgAC- -5'
6349 5' -56.6 NC_001847.1 + 96864 0.66 0.887337
Target:  5'- gCGGUGggCGGCggucCGCGCuggggaggGACCGCCg- -3'
miRNA:   3'- aGUCACa-GCUGa---GCGUG--------CUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 87566 0.67 0.834315
Target:  5'- cCGGccuuccUCGGCgcgUGCGCGGCCGCCg- -3'
miRNA:   3'- aGUCac----AGCUGa--GCGUGCUGGCGGac -5'
6349 5' -56.6 NC_001847.1 + 85292 0.66 0.85048
Target:  5'- aUCuuGUGg-GACagcagcaGCACGGCCGCCUGc -3'
miRNA:   3'- -AGu-CACagCUGag-----CGUGCUGGCGGAC- -5'
6349 5' -56.6 NC_001847.1 + 81387 0.68 0.790835
Target:  5'- cUCGGUG-CGcACUCGCAgCuGCCGCgUGa -3'
miRNA:   3'- -AGUCACaGC-UGAGCGU-GcUGGCGgAC- -5'
6349 5' -56.6 NC_001847.1 + 80539 0.66 0.887337
Target:  5'- gUCGGcaUCGGCgcgggCGCGCG-CCGCCa- -3'
miRNA:   3'- -AGUCacAGCUGa----GCGUGCuGGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.