Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
635 | 5' | -50.6 | AC_000017.1 | + | 18723 | 0.66 | 0.856657 |
Target: 5'- aGUUGCcACuggcuacgGGCcGCAACGaucGCGGACCg -3' miRNA: 3'- -CAAUGuUG--------UCGcCGUUGCa--CGUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 34917 | 0.66 | 0.808904 |
Target: 5'- --gGCGGggaAGUGGCcgcgcuggucCGUGCAGACCu -3' miRNA: 3'- caaUGUUg--UCGCCGuu--------GCACGUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 9490 | 0.66 | 0.847603 |
Target: 5'- --gGCGACGGCgcauggucucGGUGACG-GCGcGGCCg -3' miRNA: 3'- caaUGUUGUCG----------CCGUUGCaCGU-CUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 30533 | 0.66 | 0.818928 |
Target: 5'- --cGCAaaGCAGCGGCAGa--GCAGgaacGCCu -3' miRNA: 3'- caaUGU--UGUCGCCGUUgcaCGUC----UGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 27971 | 0.67 | 0.755858 |
Target: 5'- --gGCGGCAGUGGuCAAgGUGUguuAGGCg -3' miRNA: 3'- caaUGUUGUCGCC-GUUgCACG---UCUGg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 18650 | 0.67 | 0.798667 |
Target: 5'- gGUUACAACAaCGGCgGACGgcccugGCAGcACa -3' miRNA: 3'- -CAAUGUUGUcGCCG-UUGCa-----CGUC-UGg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 17758 | 0.67 | 0.755858 |
Target: 5'- --cACGGCcugacgGGCGGCAugcguCGUGCGcACCa -3' miRNA: 3'- caaUGUUG------UCGCCGUu----GCACGUcUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 16237 | 0.67 | 0.7997 |
Target: 5'- --cGCGGCGGCGGCccugcuuaaccgcgcACGUcGCAccGGCCg -3' miRNA: 3'- caaUGUUGUCGCCGu--------------UGCA-CGU--CUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 16397 | 0.68 | 0.699195 |
Target: 5'- -----cGCAGgGGCAACGUGUacugGGugCg -3' miRNA: 3'- caauguUGUCgCCGUUGCACG----UCugG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 16510 | 0.68 | 0.744759 |
Target: 5'- aGUUGCGcggGgGGCGGguGCGcacgggcacgcGCAGGCCg -3' miRNA: 3'- -CAAUGU---UgUCGCCguUGCa----------CGUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 16402 | 0.68 | 0.733528 |
Target: 5'- -cUGCuGCGGCGGCcgcuCGUcGCcuGGACCu -3' miRNA: 3'- caAUGuUGUCGCCGuu--GCA-CG--UCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 6556 | 0.68 | 0.722182 |
Target: 5'- --cGCAAgGGCGGCcGCcucUGCuGGACCa -3' miRNA: 3'- caaUGUUgUCGCCGuUGc--ACG-UCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 20560 | 0.68 | 0.699195 |
Target: 5'- --aGCAACauggAGCGGUAGCGU--AGGCCc -3' miRNA: 3'- caaUGUUG----UCGCCGUUGCAcgUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 34964 | 0.68 | 0.710733 |
Target: 5'- uGUUGCAugGGCGGCGAUauaaaaUGCaaGGugCu -3' miRNA: 3'- -CAAUGUugUCGCCGUUGc-----ACG--UCugG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 12226 | 0.68 | 0.699195 |
Target: 5'- --gGCAACGuCGGCGGCGUGgAGGa- -3' miRNA: 3'- caaUGUUGUcGCCGUUGCACgUCUgg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 16520 | 0.68 | 0.722182 |
Target: 5'- ---cCAGCGGCGGCGGCGcGCAu--- -3' miRNA: 3'- caauGUUGUCGCCGUUGCaCGUcugg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 28774 | 0.68 | 0.744759 |
Target: 5'- cUUACccUAGCGGCAGucUGCAGugCu -3' miRNA: 3'- cAAUGuuGUCGCCGUUgcACGUCugG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 15794 | 0.69 | 0.687582 |
Target: 5'- uGUUGC-GCAGCGGUAGCGUcCcguGAUCu -3' miRNA: 3'- -CAAUGuUGUCGCCGUUGCAcGu--CUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 26605 | 0.69 | 0.652432 |
Target: 5'- --gGCuAACGGCGGCGGC-UGCuuGGACUu -3' miRNA: 3'- caaUG-UUGUCGCCGUUGcACG--UCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 26296 | 0.69 | 0.639477 |
Target: 5'- ----uGGCGGCGGCAGC-UGCAGcuucuuuuuggguGCCa -3' miRNA: 3'- caaugUUGUCGCCGUUGcACGUC-------------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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