miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
635 5' -50.6 AC_000017.1 + 12624 1.14 0.000757
Target:  5'- cGUUACAACAGCGGCAACGUGCAGACCa -3'
miRNA:   3'- -CAAUGUUGUCGCCGUUGCACGUCUGG- -5'
635 5' -50.6 AC_000017.1 + 16249 0.81 0.156475
Target:  5'- --gGCGGCGGUGGCGACGUGCuacgcGCCu -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCACGuc---UGG- -5'
635 5' -50.6 AC_000017.1 + 17146 0.8 0.16592
Target:  5'- -gUGCGACcaaucaagcaGGUGGCAccgggacuggGCGUGCAGACCg -3'
miRNA:   3'- caAUGUUG----------UCGCCGU----------UGCACGUCUGG- -5'
635 5' -50.6 AC_000017.1 + 26757 0.78 0.233932
Target:  5'- --gGCGGCAGCGGCAGCaacaGCAGcgGCCa -3'
miRNA:   3'- caaUGUUGUCGCCGUUGca--CGUC--UGG- -5'
635 5' -50.6 AC_000017.1 + 15081 0.78 0.24055
Target:  5'- --aACAACAGUGGCAGCGgcGCGGAa- -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCa-CGUCUgg -5'
635 5' -50.6 AC_000017.1 + 13042 0.76 0.307279
Target:  5'- ----gGACAGUGGCAGCGUGUcccgGGACa -3'
miRNA:   3'- caaugUUGUCGCCGUUGCACG----UCUGg -5'
635 5' -50.6 AC_000017.1 + 2193 0.75 0.332467
Target:  5'- --gGCGGCGGCGGCGGCaggaGCAGAgCCc -3'
miRNA:   3'- caaUGUUGUCGCCGUUGca--CGUCU-GG- -5'
635 5' -50.6 AC_000017.1 + 11083 0.74 0.368355
Target:  5'- ---uCAGCAGCGGCAagagcaagagcaGCG-GCAGACa -3'
miRNA:   3'- caauGUUGUCGCCGU------------UGCaCGUCUGg -5'
635 5' -50.6 AC_000017.1 + 33341 0.74 0.395988
Target:  5'- --aGCGGCGGCGGCAgcaguuuauucgcGCGcugcUGCAGcACCa -3'
miRNA:   3'- caaUGUUGUCGCCGU-------------UGC----ACGUC-UGG- -5'
635 5' -50.6 AC_000017.1 + 26838 0.74 0.396964
Target:  5'- --cACAGCGGCGGCAGCa-GCAGGa- -3'
miRNA:   3'- caaUGUUGUCGCCGUUGcaCGUCUgg -5'
635 5' -50.6 AC_000017.1 + 10515 0.73 0.416814
Target:  5'- uGUUGC-GCAGCGGCAAaaaGUGCu--CCa -3'
miRNA:   3'- -CAAUGuUGUCGCCGUUg--CACGucuGG- -5'
635 5' -50.6 AC_000017.1 + 10351 0.73 0.416814
Target:  5'- -gUGCGGCGGCGGCuGGCG-GUagagGGGCCa -3'
miRNA:   3'- caAUGUUGUCGCCG-UUGCaCG----UCUGG- -5'
635 5' -50.6 AC_000017.1 + 17583 0.73 0.437258
Target:  5'- --gGCGACGGCGGCGGCGgguuccagUGguGAUUc -3'
miRNA:   3'- caaUGUUGUCGCCGUUGC--------ACguCUGG- -5'
635 5' -50.6 AC_000017.1 + 8935 0.73 0.446644
Target:  5'- --cGCuccACGGUGGCGGCGaggucguuggagaUGCGGGCCa -3'
miRNA:   3'- caaUGu--UGUCGCCGUUGC-------------ACGUCUGG- -5'
635 5' -50.6 AC_000017.1 + 8580 0.72 0.490753
Target:  5'- -aUGCAucuaaaAGCGGUGACGcggGCGGGCCc -3'
miRNA:   3'- caAUGUug----UCGCCGUUGCa--CGUCUGG- -5'
635 5' -50.6 AC_000017.1 + 3860 0.71 0.52427
Target:  5'- -cUGCAGCggcugaAGCGGCGGCGgaggcUGCAGucuCCa -3'
miRNA:   3'- caAUGUUG------UCGCCGUUGC-----ACGUCu--GG- -5'
635 5' -50.6 AC_000017.1 + 16151 0.71 0.535638
Target:  5'- --gACAcugGCGGCGGCGuggGCGUGUAGuugcgcGCCu -3'
miRNA:   3'- caaUGU---UGUCGCCGU---UGCACGUC------UGG- -5'
635 5' -50.6 AC_000017.1 + 9425 0.71 0.547092
Target:  5'- gGggAC-ACGGCGGCGACGacgGCGcACCg -3'
miRNA:   3'- -CaaUGuUGUCGCCGUUGCa--CGUcUGG- -5'
635 5' -50.6 AC_000017.1 + 13559 0.71 0.57022
Target:  5'- --gACGACAGCGuguuuuccccGCAACc-GCAGACCc -3'
miRNA:   3'- caaUGUUGUCGC----------CGUUGcaCGUCUGG- -5'
635 5' -50.6 AC_000017.1 + 25882 0.71 0.57022
Target:  5'- ----aAGCAGCuGCGAauUGCAGACCa -3'
miRNA:   3'- caaugUUGUCGcCGUUgcACGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.