Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
635 | 5' | -50.6 | AC_000017.1 | + | 15119 | 0.69 | 0.652432 |
Target: 5'- --gGCAGCcGCGGCAA--UGCAG-CCg -3' miRNA: 3'- caaUGUUGuCGCCGUUgcACGUCuGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 9425 | 0.71 | 0.547092 |
Target: 5'- gGggAC-ACGGCGGCGACGacgGCGcACCg -3' miRNA: 3'- -CaaUGuUGUCGCCGUUGCa--CGUcUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 13559 | 0.71 | 0.57022 |
Target: 5'- --gACGACAGCGuguuuuccccGCAACc-GCAGACCc -3' miRNA: 3'- caaUGUUGUCGC----------CGUUGcaCGUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 13599 | 0.71 | 0.573711 |
Target: 5'- aGUUGCAACAGCgcgagcaggcagaGGCGGCGcugcgaaaggaaagcUuccGCAGGCCa -3' miRNA: 3'- -CAAUGUUGUCG-------------CCGUUGC---------------A---CGUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 24428 | 0.7 | 0.60532 |
Target: 5'- cGUUGCAAgAGCGcaGCGAUGUGCcccucGCCa -3' miRNA: 3'- -CAAUGUUgUCGC--CGUUGCACGuc---UGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 10009 | 0.7 | 0.617087 |
Target: 5'- --cGCuGCGGCGGCGGCGgaGUuuGGCCg -3' miRNA: 3'- caaUGuUGUCGCCGUUGCa-CGu-CUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 17275 | 0.7 | 0.617087 |
Target: 5'- ---uCGGCGGUGGCAgaugccGCgGUGCAGGCg -3' miRNA: 3'- caauGUUGUCGCCGU------UG-CACGUCUGg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 23950 | 0.7 | 0.617087 |
Target: 5'- --gGgGGCGGCGGCGACG-GC-GACg -3' miRNA: 3'- caaUgUUGUCGCCGUUGCaCGuCUGg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 12336 | 0.7 | 0.62887 |
Target: 5'- ---cCGGCGGUgcgGGCGGCGcUGCAGAgCCa -3' miRNA: 3'- caauGUUGUCG---CCGUUGC-ACGUCU-GG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 8580 | 0.72 | 0.490753 |
Target: 5'- -aUGCAucuaaaAGCGGUGACGcggGCGGGCCc -3' miRNA: 3'- caAUGUug----UCGCCGUUGCa--CGUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 8935 | 0.73 | 0.446644 |
Target: 5'- --cGCuccACGGUGGCGGCGaggucguuggagaUGCGGGCCa -3' miRNA: 3'- caaUGu--UGUCGCCGUUGC-------------ACGUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 10515 | 0.73 | 0.416814 |
Target: 5'- uGUUGC-GCAGCGGCAAaaaGUGCu--CCa -3' miRNA: 3'- -CAAUGuUGUCGCCGUUg--CACGucuGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 17146 | 0.8 | 0.16592 |
Target: 5'- -gUGCGACcaaucaagcaGGUGGCAccgggacuggGCGUGCAGACCg -3' miRNA: 3'- caAUGUUG----------UCGCCGU----------UGCACGUCUGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 26757 | 0.78 | 0.233932 |
Target: 5'- --gGCGGCAGCGGCAGCaacaGCAGcgGCCa -3' miRNA: 3'- caaUGUUGUCGCCGUUGca--CGUC--UGG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 15081 | 0.78 | 0.24055 |
Target: 5'- --aACAACAGUGGCAGCGgcGCGGAa- -3' miRNA: 3'- caaUGUUGUCGCCGUUGCa-CGUCUgg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 13042 | 0.76 | 0.307279 |
Target: 5'- ----gGACAGUGGCAGCGUGUcccgGGACa -3' miRNA: 3'- caaugUUGUCGCCGUUGCACG----UCUGg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 2193 | 0.75 | 0.332467 |
Target: 5'- --gGCGGCGGCGGCGGCaggaGCAGAgCCc -3' miRNA: 3'- caaUGUUGUCGCCGUUGca--CGUCU-GG- -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 11083 | 0.74 | 0.368355 |
Target: 5'- ---uCAGCAGCGGCAagagcaagagcaGCG-GCAGACa -3' miRNA: 3'- caauGUUGUCGCCGU------------UGCaCGUCUGg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 26838 | 0.74 | 0.396964 |
Target: 5'- --cACAGCGGCGGCAGCa-GCAGGa- -3' miRNA: 3'- caaUGUUGUCGCCGUUGcaCGUCUgg -5' |
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635 | 5' | -50.6 | AC_000017.1 | + | 10351 | 0.73 | 0.416814 |
Target: 5'- -gUGCGGCGGCGGCuGGCG-GUagagGGGCCa -3' miRNA: 3'- caAUGUUGUCGCCG-UUGCaCG----UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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