Results 1 - 20 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6350 | 3' | -55.5 | NC_001847.1 | + | 128341 | 1.1 | 0.002347 |
Target: 5'- uGCACGCGGACAUGAUCACGCGCUGCUg -3' miRNA: 3'- -CGUGCGCCUGUACUAGUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 87264 | 0.84 | 0.123841 |
Target: 5'- gGCGCGCGGGCGcg--CGCGCGCUGCg -3' miRNA: 3'- -CGUGCGCCUGUacuaGUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 49158 | 0.83 | 0.137555 |
Target: 5'- gGCGCGCGGACcacGGUCACGCGCcggGCg -3' miRNA: 3'- -CGUGCGCCUGua-CUAGUGCGCGa--CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 43724 | 0.83 | 0.152652 |
Target: 5'- uGCGCGCGGACGUGGUgGCGCacuCUGCc -3' miRNA: 3'- -CGUGCGCCUGUACUAgUGCGc--GACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 63522 | 0.8 | 0.234676 |
Target: 5'- uGCACGCGcGCGUG-UC-CGCGCUGCUg -3' miRNA: 3'- -CGUGCGCcUGUACuAGuGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 36010 | 0.79 | 0.252523 |
Target: 5'- gGC-CGCGGGCGUGGUgCugGgGCUGCg -3' miRNA: 3'- -CGuGCGCCUGUACUA-GugCgCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 115584 | 0.78 | 0.278039 |
Target: 5'- gGCGauCGCGGGCGUcGAUCGCGUGCgGCUu -3' miRNA: 3'- -CGU--GCGCCUGUA-CUAGUGCGCGaCGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 24512 | 0.78 | 0.291549 |
Target: 5'- cGC-CGUGGGCGUcGGggcUCGCGCGCUGCa -3' miRNA: 3'- -CGuGCGCCUGUA-CU---AGUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 133324 | 0.78 | 0.303433 |
Target: 5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3' miRNA: 3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 30511 | 0.78 | 0.303433 |
Target: 5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3' miRNA: 3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 43294 | 0.77 | 0.320098 |
Target: 5'- cGUGCGCGGGCugcgGAguacgaagCGCGCGCUGCc -3' miRNA: 3'- -CGUGCGCCUGua--CUa-------GUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 43412 | 0.77 | 0.320098 |
Target: 5'- cGUACGCGGACc---UCGCGCuGCUGCUg -3' miRNA: 3'- -CGUGCGCCUGuacuAGUGCG-CGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 87187 | 0.77 | 0.335139 |
Target: 5'- cCACGUGGACGUGAcgACGCGCuuuuUGCUg -3' miRNA: 3'- cGUGCGCCUGUACUagUGCGCG----ACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 116572 | 0.77 | 0.342851 |
Target: 5'- cGCACGUGGGCAucugcgcucUGggCGCaGCGCUGCc -3' miRNA: 3'- -CGUGCGCCUGU---------ACuaGUG-CGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 10791 | 0.76 | 0.356253 |
Target: 5'- gGUACGCGGGCcUGuuuuugggcuacugcCGCGCGCUGCUg -3' miRNA: 3'- -CGUGCGCCUGuACua-------------GUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 88549 | 0.76 | 0.358656 |
Target: 5'- uGCGCGUGG-CGUGAccgcgcUCGCGCGCgGCg -3' miRNA: 3'- -CGUGCGCCuGUACU------AGUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 132116 | 0.76 | 0.358656 |
Target: 5'- gGCGCGCaGACGUGAcCGCcccuauugggcgGCGCUGCUg -3' miRNA: 3'- -CGUGCGcCUGUACUaGUG------------CGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 72588 | 0.76 | 0.391766 |
Target: 5'- -uGCGCGGGC-UGGgccaaaACGCGCUGCUg -3' miRNA: 3'- cgUGCGCCUGuACUag----UGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 117410 | 0.76 | 0.391766 |
Target: 5'- uGCGCGCGGugGacgcuUCGCGCGgCUGCg -3' miRNA: 3'- -CGUGCGCCugUacu--AGUGCGC-GACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 103386 | 0.76 | 0.391766 |
Target: 5'- cGCGCGCGGguGCAcgcUGAcCACGCGCcGCUc -3' miRNA: 3'- -CGUGCGCC--UGU---ACUaGUGCGCGaCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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