miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 128341 1.1 0.002347
Target:  5'- uGCACGCGGACAUGAUCACGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCUGUACUAGUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 87264 0.84 0.123841
Target:  5'- gGCGCGCGGGCGcg--CGCGCGCUGCg -3'
miRNA:   3'- -CGUGCGCCUGUacuaGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 49158 0.83 0.137555
Target:  5'- gGCGCGCGGACcacGGUCACGCGCcggGCg -3'
miRNA:   3'- -CGUGCGCCUGua-CUAGUGCGCGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 43724 0.83 0.152652
Target:  5'- uGCGCGCGGACGUGGUgGCGCacuCUGCc -3'
miRNA:   3'- -CGUGCGCCUGUACUAgUGCGc--GACGa -5'
6350 3' -55.5 NC_001847.1 + 63522 0.8 0.234676
Target:  5'- uGCACGCGcGCGUG-UC-CGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCcUGUACuAGuGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 36010 0.79 0.252523
Target:  5'- gGC-CGCGGGCGUGGUgCugGgGCUGCg -3'
miRNA:   3'- -CGuGCGCCUGUACUA-GugCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 115584 0.78 0.278039
Target:  5'- gGCGauCGCGGGCGUcGAUCGCGUGCgGCUu -3'
miRNA:   3'- -CGU--GCGCCUGUA-CUAGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 24512 0.78 0.291549
Target:  5'- cGC-CGUGGGCGUcGGggcUCGCGCGCUGCa -3'
miRNA:   3'- -CGuGCGCCUGUA-CU---AGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 133324 0.78 0.303433
Target:  5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3'
miRNA:   3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 30511 0.78 0.303433
Target:  5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3'
miRNA:   3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 43294 0.77 0.320098
Target:  5'- cGUGCGCGGGCugcgGAguacgaagCGCGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGua--CUa-------GUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 43412 0.77 0.320098
Target:  5'- cGUACGCGGACc---UCGCGCuGCUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuacuAGUGCG-CGACGA- -5'
6350 3' -55.5 NC_001847.1 + 87187 0.77 0.335139
Target:  5'- cCACGUGGACGUGAcgACGCGCuuuuUGCUg -3'
miRNA:   3'- cGUGCGCCUGUACUagUGCGCG----ACGA- -5'
6350 3' -55.5 NC_001847.1 + 116572 0.77 0.342851
Target:  5'- cGCACGUGGGCAucugcgcucUGggCGCaGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGU---------ACuaGUG-CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 10791 0.76 0.356253
Target:  5'- gGUACGCGGGCcUGuuuuugggcuacugcCGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuACua-------------GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 88549 0.76 0.358656
Target:  5'- uGCGCGUGG-CGUGAccgcgcUCGCGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCuGUACU------AGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 132116 0.76 0.358656
Target:  5'- gGCGCGCaGACGUGAcCGCcccuauugggcgGCGCUGCUg -3'
miRNA:   3'- -CGUGCGcCUGUACUaGUG------------CGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 72588 0.76 0.391766
Target:  5'- -uGCGCGGGC-UGGgccaaaACGCGCUGCUg -3'
miRNA:   3'- cgUGCGCCUGuACUag----UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 117410 0.76 0.391766
Target:  5'- uGCGCGCGGugGacgcuUCGCGCGgCUGCg -3'
miRNA:   3'- -CGUGCGCCugUacu--AGUGCGC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 103386 0.76 0.391766
Target:  5'- cGCGCGCGGguGCAcgcUGAcCACGCGCcGCUc -3'
miRNA:   3'- -CGUGCGCC--UGU---ACUaGUGCGCGaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.