miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 1381 0.68 0.793801
Target:  5'- -aGCGCcGGCAg---CACGCGCUGCc -3'
miRNA:   3'- cgUGCGcCUGUacuaGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 2353 0.67 0.875947
Target:  5'- uGCACG-GGccGCAUGAgguccagUCGCGCGCccGCg -3'
miRNA:   3'- -CGUGCgCC--UGUACU-------AGUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 3712 0.66 0.897469
Target:  5'- -gGCGCGG-CA--AUCGCGCGCgccgGCc -3'
miRNA:   3'- cgUGCGCCuGUacUAGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 3803 0.71 0.634257
Target:  5'- cGCACGCGGcCGggcggcGGcgGCGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCuGUa-----CUagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 3913 0.71 0.665315
Target:  5'- -aGCGCGGGCGccGGUUGCGCGCccGCg -3'
miRNA:   3'- cgUGCGCCUGUa-CUAGUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 3916 0.66 0.89077
Target:  5'- -gGCGCGGACGcacgCACaGCGCUgGCa -3'
miRNA:   3'- cgUGCGCCUGUacuaGUG-CGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 4292 0.67 0.85387
Target:  5'- cGCGCGCcGGCGccuUGGuacUCGCGCGCcGCc -3'
miRNA:   3'- -CGUGCGcCUGU---ACU---AGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 5951 0.67 0.861686
Target:  5'- aGCGCGCGuACGUacgCGCGCGC-GCg -3'
miRNA:   3'- -CGUGCGCcUGUAcuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 7341 0.72 0.56209
Target:  5'- uGCAagaaGCGGugGUagccGUCAgCGCGCUGCUg -3'
miRNA:   3'- -CGUg---CGCCugUAc---UAGU-GCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 10174 0.74 0.490379
Target:  5'- cGCGCGCGG-CuuaagcaGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCuGuacuag-UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 10596 0.72 0.56209
Target:  5'- cGCGCGCGGGCcgGcgCcggccCGCGCccUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuaCuaGu----GCGCG--ACGA- -5'
6350 3' -55.5 NC_001847.1 + 10791 0.76 0.356253
Target:  5'- gGUACGCGGGCcUGuuuuugggcuacugcCGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuACua-------------GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 11725 0.67 0.845847
Target:  5'- ---gGCGGcACGU-AUgACGCGCUGCUg -3'
miRNA:   3'- cgugCGCC-UGUAcUAgUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 11829 0.68 0.806497
Target:  5'- aGCGCGCGGgggggggggcgccuaGCGgaggauggacuUGAgu-CGCGCUGCUa -3'
miRNA:   3'- -CGUGCGCC---------------UGU-----------ACUaguGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 12044 0.66 0.910154
Target:  5'- -aGCGCuGGACGcccu-GCGCGCUGCg -3'
miRNA:   3'- cgUGCG-CCUGUacuagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 12900 0.7 0.716403
Target:  5'- aGCACGCGGAag----CGCGCGCcgUGCc -3'
miRNA:   3'- -CGUGCGCCUguacuaGUGCGCG--ACGa -5'
6350 3' -55.5 NC_001847.1 + 13123 0.7 0.685897
Target:  5'- gGCGCGCGGGCG-GcgC-CGCGCcGCc -3'
miRNA:   3'- -CGUGCGCCUGUaCuaGuGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 13744 0.69 0.746245
Target:  5'- -gGCGUGGGgcUGAUCGCGCaGCgGCUg -3'
miRNA:   3'- cgUGCGCCUguACUAGUGCG-CGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 13841 0.66 0.903296
Target:  5'- uGCGCGaGGGCAcGcUCGCGCGguacagcCUGCUa -3'
miRNA:   3'- -CGUGCgCCUGUaCuAGUGCGC-------GACGA- -5'
6350 3' -55.5 NC_001847.1 + 14338 0.66 0.89077
Target:  5'- -gGC-CGGGCGUGGUgGCGgCGcCUGCg -3'
miRNA:   3'- cgUGcGCCUGUACUAgUGC-GC-GACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.