Results 1 - 20 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 3' | -55.5 | NC_001847.1 | + | 1381 | 0.68 | 0.793801 |
Target: 5'- -aGCGCcGGCAg---CACGCGCUGCc -3' miRNA: 3'- cgUGCGcCUGUacuaGUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 2353 | 0.67 | 0.875947 |
Target: 5'- uGCACG-GGccGCAUGAgguccagUCGCGCGCccGCg -3' miRNA: 3'- -CGUGCgCC--UGUACU-------AGUGCGCGa-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 3712 | 0.66 | 0.897469 |
Target: 5'- -gGCGCGG-CA--AUCGCGCGCgccgGCc -3' miRNA: 3'- cgUGCGCCuGUacUAGUGCGCGa---CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 3803 | 0.71 | 0.634257 |
Target: 5'- cGCACGCGGcCGggcggcGGcgGCGCGCUGCc -3' miRNA: 3'- -CGUGCGCCuGUa-----CUagUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 3913 | 0.71 | 0.665315 |
Target: 5'- -aGCGCGGGCGccGGUUGCGCGCccGCg -3' miRNA: 3'- cgUGCGCCUGUa-CUAGUGCGCGa-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 3916 | 0.66 | 0.89077 |
Target: 5'- -gGCGCGGACGcacgCACaGCGCUgGCa -3' miRNA: 3'- cgUGCGCCUGUacuaGUG-CGCGA-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 4292 | 0.67 | 0.85387 |
Target: 5'- cGCGCGCcGGCGccuUGGuacUCGCGCGCcGCc -3' miRNA: 3'- -CGUGCGcCUGU---ACU---AGUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 5951 | 0.67 | 0.861686 |
Target: 5'- aGCGCGCGuACGUacgCGCGCGC-GCg -3' miRNA: 3'- -CGUGCGCcUGUAcuaGUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 7341 | 0.72 | 0.56209 |
Target: 5'- uGCAagaaGCGGugGUagccGUCAgCGCGCUGCUg -3' miRNA: 3'- -CGUg---CGCCugUAc---UAGU-GCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 10174 | 0.74 | 0.490379 |
Target: 5'- cGCGCGCGG-CuuaagcaGCGCGCUGCUg -3' miRNA: 3'- -CGUGCGCCuGuacuag-UGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 10596 | 0.72 | 0.56209 |
Target: 5'- cGCGCGCGGGCcgGcgCcggccCGCGCccUGCUg -3' miRNA: 3'- -CGUGCGCCUGuaCuaGu----GCGCG--ACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 10791 | 0.76 | 0.356253 |
Target: 5'- gGUACGCGGGCcUGuuuuugggcuacugcCGCGCGCUGCUg -3' miRNA: 3'- -CGUGCGCCUGuACua-------------GUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 11725 | 0.67 | 0.845847 |
Target: 5'- ---gGCGGcACGU-AUgACGCGCUGCUg -3' miRNA: 3'- cgugCGCC-UGUAcUAgUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 11829 | 0.68 | 0.806497 |
Target: 5'- aGCGCGCGGgggggggggcgccuaGCGgaggauggacuUGAgu-CGCGCUGCUa -3' miRNA: 3'- -CGUGCGCC---------------UGU-----------ACUaguGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 12044 | 0.66 | 0.910154 |
Target: 5'- -aGCGCuGGACGcccu-GCGCGCUGCg -3' miRNA: 3'- cgUGCG-CCUGUacuagUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 12900 | 0.7 | 0.716403 |
Target: 5'- aGCACGCGGAag----CGCGCGCcgUGCc -3' miRNA: 3'- -CGUGCGCCUguacuaGUGCGCG--ACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 13123 | 0.7 | 0.685897 |
Target: 5'- gGCGCGCGGGCG-GcgC-CGCGCcGCc -3' miRNA: 3'- -CGUGCGCCUGUaCuaGuGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 13744 | 0.69 | 0.746245 |
Target: 5'- -gGCGUGGGgcUGAUCGCGCaGCgGCUg -3' miRNA: 3'- cgUGCGCCUguACUAGUGCG-CGaCGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 13841 | 0.66 | 0.903296 |
Target: 5'- uGCGCGaGGGCAcGcUCGCGCGguacagcCUGCUa -3' miRNA: 3'- -CGUGCgCCUGUaCuAGUGCGC-------GACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 14338 | 0.66 | 0.89077 |
Target: 5'- -gGC-CGGGCGUGGUgGCGgCGcCUGCg -3' miRNA: 3'- cgUGcGCCUGUACUAgUGC-GC-GACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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