miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 14622 0.66 0.89077
Target:  5'- aGCACGUGGuuuucgaccGCGgcgcUCGCGCGCcGCUc -3'
miRNA:   3'- -CGUGCGCC---------UGUacu-AGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 14715 0.67 0.86929
Target:  5'- aCGCGCGGGCAgGAggcgaACGCGgucguCUGCa -3'
miRNA:   3'- cGUGCGCCUGUaCUag---UGCGC-----GACGa -5'
6350 3' -55.5 NC_001847.1 + 15005 0.66 0.883838
Target:  5'- aGCGCGCcggaGGACAaGGUCGCG-GCaaugGCUu -3'
miRNA:   3'- -CGUGCG----CCUGUaCUAGUGCgCGa---CGA- -5'
6350 3' -55.5 NC_001847.1 + 15305 0.71 0.638404
Target:  5'- uGCGCGCGGgcgugcgcgacccguACAUGAUCgcggccauccGCGCGCagUGCc -3'
miRNA:   3'- -CGUGCGCC---------------UGUACUAG----------UGCGCG--ACGa -5'
6350 3' -55.5 NC_001847.1 + 15422 0.68 0.829212
Target:  5'- -aGCGCGGcACGgcgagcUGGUuuaagCugGCGCUGCUg -3'
miRNA:   3'- cgUGCGCC-UGU------ACUA-----GugCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 16666 0.69 0.755029
Target:  5'- -gGCGCGGGCGc-GUCGCGCagccuugGCUGCg -3'
miRNA:   3'- cgUGCGCCUGUacUAGUGCG-------CGACGa -5'
6350 3' -55.5 NC_001847.1 + 17381 0.72 0.582563
Target:  5'- gGCGCGCGGugcguCGUGAcggUCACgaccuuGCGCUGUg -3'
miRNA:   3'- -CGUGCGCCu----GUACU---AGUG------CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 17637 0.67 0.837625
Target:  5'- cGCGCGUGGAgCGgaaccUGccCACGCGCUGa- -3'
miRNA:   3'- -CGUGCGCCU-GU-----ACuaGUGCGCGACga -5'
6350 3' -55.5 NC_001847.1 + 17976 0.66 0.897469
Target:  5'- aGCAC-CGGGCGUGcuguccUCugGCGUaGCg -3'
miRNA:   3'- -CGUGcGCCUGUACu-----AGugCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 18820 0.69 0.775163
Target:  5'- cGCGCGCauGGGCAcGGcguccUCGCGCGCgccGCa -3'
miRNA:   3'- -CGUGCG--CCUGUaCU-----AGUGCGCGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 20843 0.68 0.793801
Target:  5'- cGCGCGCGGucGCAaagcgaGUC-UGCGCUGCg -3'
miRNA:   3'- -CGUGCGCC--UGUac----UAGuGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 21193 0.67 0.879568
Target:  5'- cGCGCccgGCGG-CGUaggagacgccgccgcGAcCGCGCGCUGCUu -3'
miRNA:   3'- -CGUG---CGCCuGUA---------------CUaGUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 21681 0.67 0.861686
Target:  5'- cGgACaCGGACAUGAUCcuuAUGgGCUGUg -3'
miRNA:   3'- -CgUGcGCCUGUACUAG---UGCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 21868 0.66 0.903932
Target:  5'- gGUGCGgGGGC-UGcg-GCGCGCUGCc -3'
miRNA:   3'- -CGUGCgCCUGuACuagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 22083 0.74 0.492317
Target:  5'- -uGCGCaGACGUGcgCcgACGCGCUGCg -3'
miRNA:   3'- cgUGCGcCUGUACuaG--UGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 22163 0.72 0.582563
Target:  5'- aGCACGUgguGGACAcGAUCGCGcCGCgaaUGCg -3'
miRNA:   3'- -CGUGCG---CCUGUaCUAGUGC-GCG---ACGa -5'
6350 3' -55.5 NC_001847.1 + 22268 0.7 0.716403
Target:  5'- aGCGCGCGGcGCA-GcgCGCGCGUgucgGCc -3'
miRNA:   3'- -CGUGCGCC-UGUaCuaGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 24512 0.78 0.291549
Target:  5'- cGC-CGUGGGCGUcGGggcUCGCGCGCUGCa -3'
miRNA:   3'- -CGuGCGCCUGUA-CU---AGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 25209 0.72 0.603182
Target:  5'- cGCGCGCGGccggcaaagaGCAUGAUCG-GCGUcGCg -3'
miRNA:   3'- -CGUGCGCC----------UGUACUAGUgCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 27684 0.68 0.829212
Target:  5'- gGCGCGuCGGGC-UGAg-GCGCGCgaGCg -3'
miRNA:   3'- -CGUGC-GCCUGuACUagUGCGCGa-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.