miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 130497 0.68 0.829212
Target:  5'- gGCGCGuCGGGC-UGAg-GCGCGCgaGCg -3'
miRNA:   3'- -CGUGC-GCCUGuACUagUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 130101 0.66 0.908313
Target:  5'- cGCgACGCGGGCugggacGAguacgagagcgcccUCGCGCGCgaggGCg -3'
miRNA:   3'- -CG-UGCGCCUGua----CU--------------AGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 129196 0.68 0.793801
Target:  5'- cGCGCGCGuACGUa--CGCGCGCUuGCUc -3'
miRNA:   3'- -CGUGCGCcUGUAcuaGUGCGCGA-CGA- -5'
6350 3' -55.5 NC_001847.1 + 128341 1.1 0.002347
Target:  5'- uGCACGCGGACAUGAUCACGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCUGUACUAGUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 128238 0.69 0.746245
Target:  5'- aGCGCGCaGGGCGcg--CGCGCGCUcGCc -3'
miRNA:   3'- -CGUGCG-CCUGUacuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 127091 0.65 0.913771
Target:  5'- uGCGCGCGGGCcgcgcggcuuugGGUCcacCGgGCUGUa -3'
miRNA:   3'- -CGUGCGCCUGua----------CUAGu--GCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 125081 0.7 0.716403
Target:  5'- aGCGCGCGGcGCA-GcgCGCGCGUgucgGCc -3'
miRNA:   3'- -CGUGCGCC-UGUaCuaGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 123732 0.66 0.910154
Target:  5'- aGCG-GCGGcgGCAUcGGcgGCGCGCUGCa -3'
miRNA:   3'- -CGUgCGCC--UGUA-CUagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 122676 0.67 0.876676
Target:  5'- cCACGCGGGaagccgcgGAggcuccgccgCGCGCGCUGUg -3'
miRNA:   3'- cGUGCGCCUgua-----CUa---------GUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 121866 0.69 0.735397
Target:  5'- cGCGCGCacaGGGCcgGcaccgcagucagcAUCACGCGCaGCUc -3'
miRNA:   3'- -CGUGCG---CCUGuaC-------------UAGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 121765 0.68 0.811841
Target:  5'- gGCGCGCccGGACGUGcgCGCcguuCGCgGCUg -3'
miRNA:   3'- -CGUGCG--CCUGUACuaGUGc---GCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 120938 0.69 0.736388
Target:  5'- gGCGCGCGGGCGUGGUgGCuGaUGUggGCg -3'
miRNA:   3'- -CGUGCGCCUGUACUAgUG-C-GCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 120255 0.66 0.889402
Target:  5'- uGCGCGCGGACGgccccguaGCGUucGCUGUc -3'
miRNA:   3'- -CGUGCGCCUGUacuag---UGCG--CGACGa -5'
6350 3' -55.5 NC_001847.1 + 118760 0.7 0.716403
Target:  5'- aCGCGCGGuuGUGG-CGCGCGgUGUg -3'
miRNA:   3'- cGUGCGCCugUACUaGUGCGCgACGa -5'
6350 3' -55.5 NC_001847.1 + 117502 0.74 0.501082
Target:  5'- aGCGCGUGGGCA-GGUuccgcucCACGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCUGUaCUA-------GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 117410 0.76 0.391766
Target:  5'- uGCGCGCGGugGacgcuUCGCGCGgCUGCg -3'
miRNA:   3'- -CGUGCGCCugUacu--AGUGCGC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 116694 0.68 0.819745
Target:  5'- -aGCGCGGGCGUcgucgcguacgaGAUgcuggcauacccgCGCGCGCUGUUc -3'
miRNA:   3'- cgUGCGCCUGUA------------CUA-------------GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 116654 0.69 0.740342
Target:  5'- aGC-CGCGGGCAcgcUGGUgGCcugcguguggguccgGCGCUGCg -3'
miRNA:   3'- -CGuGCGCCUGU---ACUAgUG---------------CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 116616 0.66 0.910154
Target:  5'- -gGCGCGGACGgcgGcgCGCccgcaGCGCUGg- -3'
miRNA:   3'- cgUGCGCCUGUa--CuaGUG-----CGCGACga -5'
6350 3' -55.5 NC_001847.1 + 116572 0.77 0.342851
Target:  5'- cGCACGUGGGCAucugcgcucUGggCGCaGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGU---------ACuaGUG-CGCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.