miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 43724 0.83 0.152652
Target:  5'- uGCGCGCGGACGUGGUgGCGCacuCUGCc -3'
miRNA:   3'- -CGUGCGCCUGUACUAgUGCGc--GACGa -5'
6350 3' -55.5 NC_001847.1 + 42392 0.72 0.56209
Target:  5'- aGCuCGCGGagccGCAUGuUCGCGCGC-GCUg -3'
miRNA:   3'- -CGuGCGCC----UGUACuAGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 35182 0.72 0.56209
Target:  5'- gGCACGCGGcCuucgagGAggagCGCGCGCgGCUg -3'
miRNA:   3'- -CGUGCGCCuGua----CUa---GUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 10174 0.74 0.490379
Target:  5'- cGCGCGCGG-CuuaagcaGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCuGuacuag-UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 72313 0.76 0.391766
Target:  5'- cGCGCGCGuGGCGgugGAcgCggACGCGCUGCUg -3'
miRNA:   3'- -CGUGCGC-CUGUa--CUa-G--UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 25209 0.72 0.603182
Target:  5'- cGCGCGCGGccggcaaagaGCAUGAUCG-GCGUcGCg -3'
miRNA:   3'- -CGUGCGCC----------UGUACUAGUgCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 63855 0.72 0.572304
Target:  5'- uGCGCGCGGGgG-GcgCAUGCGCgacgGCUg -3'
miRNA:   3'- -CGUGCGCCUgUaCuaGUGCGCGa---CGA- -5'
6350 3' -55.5 NC_001847.1 + 10791 0.76 0.356253
Target:  5'- gGUACGCGGGCcUGuuuuugggcuacugcCGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuACua-------------GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 78684 0.73 0.511887
Target:  5'- cGCACGCGGGCGcUGGUgccgggcagCACGCGagUGCg -3'
miRNA:   3'- -CGUGCGCCUGU-ACUA---------GUGCGCg-ACGa -5'
6350 3' -55.5 NC_001847.1 + 94190 0.74 0.492317
Target:  5'- uCGCGCGGGCAgu-UCGagGCGCUGCg -3'
miRNA:   3'- cGUGCGCCUGUacuAGUg-CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 43294 0.77 0.320098
Target:  5'- cGUGCGCGGGCugcgGAguacgaagCGCGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGua--CUa-------GUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 133324 0.78 0.303433
Target:  5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3'
miRNA:   3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 80749 0.72 0.603182
Target:  5'- cGCGuCGUGGACuUGGUC-CGCGCcgGCg -3'
miRNA:   3'- -CGU-GCGCCUGuACUAGuGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 89675 0.72 0.603182
Target:  5'- aGCACGCGcGAC-UGG-CGCGCGCuauuUGCg -3'
miRNA:   3'- -CGUGCGC-CUGuACUaGUGCGCG----ACGa -5'
6350 3' -55.5 NC_001847.1 + 7341 0.72 0.56209
Target:  5'- uGCAagaaGCGGugGUagccGUCAgCGCGCUGCUg -3'
miRNA:   3'- -CGUg---CGCCugUAc---UAGU-GCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 40128 0.74 0.454268
Target:  5'- uGCGCGUGGGCgaGUGAUUggacacauGCGCGCaGCUg -3'
miRNA:   3'- -CGUGCGCCUG--UACUAG--------UGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 70198 0.75 0.445006
Target:  5'- gGCACgGCGGACcagcUGcugCGCGUGCUGCUg -3'
miRNA:   3'- -CGUG-CGCCUGu---ACua-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 24512 0.78 0.291549
Target:  5'- cGC-CGUGGGCGUcGGggcUCGCGCGCUGCa -3'
miRNA:   3'- -CGuGCGCCUGUA-CU---AGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 22083 0.74 0.492317
Target:  5'- -uGCGCaGACGUGcgCcgACGCGCUGCg -3'
miRNA:   3'- cgUGCGcCUGUACuaG--UGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 77983 0.73 0.521791
Target:  5'- uGCugGCGGGCGgcGAgCGCGCcCUGCUg -3'
miRNA:   3'- -CGugCGCCUGUa-CUaGUGCGcGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.