miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 59880 0.66 0.881713
Target:  5'- gGCGCGCGGccuccGCGUuggcgaggagggcgGcgCGCGCGCgcgGCg -3'
miRNA:   3'- -CGUGCGCC-----UGUA--------------CuaGUGCGCGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 105232 0.66 0.897469
Target:  5'- gGCGCGCGGGCAcaggCGgGCGCacuucggGCg -3'
miRNA:   3'- -CGUGCGCCUGUacuaGUgCGCGa------CGa -5'
6350 3' -55.5 NC_001847.1 + 132828 0.66 0.910154
Target:  5'- cGCGCaGCGGGCGUGucgcCAUGgGCaGCc -3'
miRNA:   3'- -CGUG-CGCCUGUACua--GUGCgCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 101346 0.66 0.910154
Target:  5'- aGCGCGcCGGGCGc---CGCGCGCaGCc -3'
miRNA:   3'- -CGUGC-GCCUGUacuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 116616 0.66 0.910154
Target:  5'- -gGCGCGGACGgcgGcgCGCccgcaGCGCUGg- -3'
miRNA:   3'- cgUGCGCCUGUa--CuaGUG-----CGCGACga -5'
6350 3' -55.5 NC_001847.1 + 30979 0.66 0.910154
Target:  5'- gGCGCaaGGACAUGGcCGCGCaggGCgcgGCg -3'
miRNA:   3'- -CGUGcgCCUGUACUaGUGCG---CGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 130101 0.66 0.908313
Target:  5'- cGCgACGCGGGCugggacGAguacgagagcgcccUCGCGCGCgaggGCg -3'
miRNA:   3'- -CG-UGCGCCUGua----CU--------------AGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 87332 0.66 0.903932
Target:  5'- uGCAcCGCGGACAaccuggagccGAUCGCGgGC-GCc -3'
miRNA:   3'- -CGU-GCGCCUGUa---------CUAGUGCgCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 116445 0.66 0.903932
Target:  5'- gGCG-GUGGGCGcUGGcgCACGCGCgGCg -3'
miRNA:   3'- -CGUgCGCCUGU-ACUa-GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 84446 0.66 0.897469
Target:  5'- cGCACGCGuGCcgGucGUCGCGCGa-GCa -3'
miRNA:   3'- -CGUGCGCcUGuaC--UAGUGCGCgaCGa -5'
6350 3' -55.5 NC_001847.1 + 116489 0.66 0.897469
Target:  5'- cGCGgGCGGGCAcGG-CGuCGCGCUcGCc -3'
miRNA:   3'- -CGUgCGCCUGUaCUaGU-GCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 68745 0.66 0.883838
Target:  5'- cGCGcCGCGGAUGUGcgCGCGUGaugacauaGCUa -3'
miRNA:   3'- -CGU-GCGCCUGUACuaGUGCGCga------CGA- -5'
6350 3' -55.5 NC_001847.1 + 73914 0.66 0.897469
Target:  5'- cGUACGUGGACGacguUCAcCGCGCaGCc -3'
miRNA:   3'- -CGUGCGCCUGUacu-AGU-GCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 65501 0.66 0.897469
Target:  5'- -gGCGCGG-UGUGGggcggCGCGCGCagUGCg -3'
miRNA:   3'- cgUGCGCCuGUACUa----GUGCGCG--ACGa -5'
6350 3' -55.5 NC_001847.1 + 79225 0.66 0.895484
Target:  5'- gGCACGCGGucCGuguacUGGUUuguaauggccgcguACGUGCUGCc -3'
miRNA:   3'- -CGUGCGCCu-GU-----ACUAG--------------UGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 46591 0.66 0.89077
Target:  5'- cGCGCGCGaGCGcGGUCACGCcacGC-GCa -3'
miRNA:   3'- -CGUGCGCcUGUaCUAGUGCG---CGaCGa -5'
6350 3' -55.5 NC_001847.1 + 109951 0.66 0.89077
Target:  5'- cGCGCGCgGGGCucg--CugGCcaGCUGCUa -3'
miRNA:   3'- -CGUGCG-CCUGuacuaGugCG--CGACGA- -5'
6350 3' -55.5 NC_001847.1 + 84288 0.66 0.89077
Target:  5'- gGCGCcCGGGCGccgaaGCGCGCUGUa -3'
miRNA:   3'- -CGUGcGCCUGUacuagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 14622 0.66 0.89077
Target:  5'- aGCACGUGGuuuucgaccGCGgcgcUCGCGCGCcGCUc -3'
miRNA:   3'- -CGUGCGCC---------UGUacu-AGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 82879 0.66 0.89077
Target:  5'- gGCGCGCGGGCAcgcGAgCACGaaGCgGCg -3'
miRNA:   3'- -CGUGCGCCUGUa--CUaGUGCg-CGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.