miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 72313 0.76 0.391766
Target:  5'- cGCGCGCGuGGCGgugGAcgCggACGCGCUGCUg -3'
miRNA:   3'- -CGUGCGC-CUGUa--CUa-G--UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 70198 0.75 0.445006
Target:  5'- gGCACgGCGGACcagcUGcugCGCGUGCUGCUg -3'
miRNA:   3'- -CGUG-CGCCUGu---ACua-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 102872 0.75 0.41787
Target:  5'- cCACGCGGACGgcgcGAgccacgCACGCGuCUGCg -3'
miRNA:   3'- cGUGCGCCUGUa---CUa-----GUGCGC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 73807 0.75 0.41787
Target:  5'- cGCACGC---CGUGGUCGcCGCGCUGCa -3'
miRNA:   3'- -CGUGCGccuGUACUAGU-GCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 91665 0.75 0.409051
Target:  5'- gGCGCgGCgGGACGcGAUCGCGCGCUcgGCg -3'
miRNA:   3'- -CGUG-CG-CCUGUaCUAGUGCGCGA--CGa -5'
6350 3' -55.5 NC_001847.1 + 52411 0.75 0.43585
Target:  5'- -aGCGCGGGCGg---CGCGCGCUGUc -3'
miRNA:   3'- cgUGCGCCUGUacuaGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 22083 0.74 0.492317
Target:  5'- -uGCGCaGACGUGcgCcgACGCGCUGCg -3'
miRNA:   3'- cgUGCGcCUGUACuaG--UGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 72433 0.74 0.463634
Target:  5'- cGCaACGCGGaACAUGcgCACGCuggacgcggcGCUGCa -3'
miRNA:   3'- -CG-UGCGCC-UGUACuaGUGCG----------CGACGa -5'
6350 3' -55.5 NC_001847.1 + 117502 0.74 0.501082
Target:  5'- aGCGCGUGGGCA-GGUuccgcucCACGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCUGUaCUA-------GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 28693 0.74 0.50206
Target:  5'- cGCugGUGGACcUGGUguaCGCGCGCcGCg -3'
miRNA:   3'- -CGugCGCCUGuACUA---GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 10174 0.74 0.490379
Target:  5'- cGCGCGCGG-CuuaagcaGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCuGuacuag-UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 81683 0.74 0.4731
Target:  5'- uGCuCGCGGGCgaGUGcucgcugCGCGCGCUGCg -3'
miRNA:   3'- -CGuGCGCCUG--UACua-----GUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 94190 0.74 0.492317
Target:  5'- uCGCGCGGGCAgu-UCGagGCGCUGCg -3'
miRNA:   3'- cGUGCGCCUGUacuAGUg-CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 40128 0.74 0.454268
Target:  5'- uGCGCGUGGGCgaGUGAUUggacacauGCGCGCaGCUg -3'
miRNA:   3'- -CGUGCGCCUG--UACUAG--------UGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 131506 0.74 0.50206
Target:  5'- cGCugGUGGACcUGGUguaCGCGCGCcGCg -3'
miRNA:   3'- -CGugCGCCUGuACUA---GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 35224 0.74 0.453337
Target:  5'- uGCGCGCGGACGUGcugCaggcggccggcggGCGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCUGUACua-G-------------UGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 80977 0.74 0.463634
Target:  5'- uGCGCGCGuuugacGACGcgGAggACGCGCUGCUg -3'
miRNA:   3'- -CGUGCGC------CUGUa-CUagUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 58599 0.74 0.482663
Target:  5'- uGCGCGCGGGCucgccuuUCGCuaGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGuacu---AGUG--CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 33565 0.74 0.482663
Target:  5'- cGCACGCGGGgGgcGUCugGCGCgGCc -3'
miRNA:   3'- -CGUGCGCCUgUacUAGugCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 58055 0.73 0.541816
Target:  5'- cGCGCGCGGGCcgccgauUGG-CGCGCGC-GCg -3'
miRNA:   3'- -CGUGCGCCUGu------ACUaGUGCGCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.