miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 43294 0.77 0.320098
Target:  5'- cGUGCGCGGGCugcgGAguacgaagCGCGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGua--CUa-------GUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 80749 0.72 0.603182
Target:  5'- cGCGuCGUGGACuUGGUC-CGCGCcgGCg -3'
miRNA:   3'- -CGU-GCGCCUGuACUAGuGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 79317 0.71 0.665315
Target:  5'- uGCGCGUcauGGACGacgacGUCACGCGaCUGCUc -3'
miRNA:   3'- -CGUGCG---CCUGUac---UAGUGCGC-GACGA- -5'
6350 3' -55.5 NC_001847.1 + 67350 0.71 0.650838
Target:  5'- uCGCGCGGACGUGGcccucggcUCuccguagcucgucCGCGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUACU--------AGu------------GCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 89675 0.72 0.603182
Target:  5'- aGCACGCGcGAC-UGG-CGCGCGCuauuUGCg -3'
miRNA:   3'- -CGUGCGC-CUGuACUaGUGCGCG----ACGa -5'
6350 3' -55.5 NC_001847.1 + 40128 0.74 0.454268
Target:  5'- uGCGCGUGGGCgaGUGAUUggacacauGCGCGCaGCUg -3'
miRNA:   3'- -CGUGCGCCUG--UACUAG--------UGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 133324 0.78 0.303433
Target:  5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3'
miRNA:   3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 24512 0.78 0.291549
Target:  5'- cGC-CGUGGGCGUcGGggcUCGCGCGCUGCa -3'
miRNA:   3'- -CGuGCGCCUGUA-CU---AGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 22083 0.74 0.492317
Target:  5'- -uGCGCaGACGUGcgCcgACGCGCUGCg -3'
miRNA:   3'- cgUGCGcCUGUACuaG--UGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 42392 0.72 0.56209
Target:  5'- aGCuCGCGGagccGCAUGuUCGCGCGC-GCUg -3'
miRNA:   3'- -CGuGCGCC----UGUACuAGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 7341 0.72 0.56209
Target:  5'- uGCAagaaGCGGugGUagccGUCAgCGCGCUGCUg -3'
miRNA:   3'- -CGUg---CGCCugUAc---UAGU-GCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 58599 0.74 0.482663
Target:  5'- uGCGCGCGGGCucgccuuUCGCuaGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGuacu---AGUG--CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 88549 0.76 0.358656
Target:  5'- uGCGCGUGG-CGUGAccgcgcUCGCGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCuGUACU------AGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 31528 0.71 0.634257
Target:  5'- -aGCGgGGACGUGccccaggcguuuGUCGCGCGCaUGCc -3'
miRNA:   3'- cgUGCgCCUGUAC------------UAGUGCGCG-ACGa -5'
6350 3' -55.5 NC_001847.1 + 71827 0.71 0.62389
Target:  5'- aGCACGcCGcGC-UGAacCACGCGCUGCUg -3'
miRNA:   3'- -CGUGC-GCcUGuACUa-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 97839 0.72 0.592858
Target:  5'- cGCGCGCGGGCug---CGCGCGCcuuauacaaUGCUc -3'
miRNA:   3'- -CGUGCGCCUGuacuaGUGCGCG---------ACGA- -5'
6350 3' -55.5 NC_001847.1 + 74489 0.71 0.643586
Target:  5'- aGgGCGCGGACGcGGcCGCGCGCacccucgUGCUg -3'
miRNA:   3'- -CgUGCGCCUGUaCUaGUGCGCG-------ACGA- -5'
6350 3' -55.5 NC_001847.1 + 30271 0.66 0.910154
Target:  5'- cGCGcCGCGGcGCAgacGA-CACaaGCGCUGCa -3'
miRNA:   3'- -CGU-GCGCC-UGUa--CUaGUG--CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 132284 0.71 0.665315
Target:  5'- cGCGCGUcggccuGGGCGcUGGcgCGCGCGCUGUUc -3'
miRNA:   3'- -CGUGCG------CCUGU-ACUa-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 34076 0.71 0.638404
Target:  5'- gGCACGCGGAgcgcguggcggccgcCGUGGcUCGCGCgGCgGCg -3'
miRNA:   3'- -CGUGCGCCU---------------GUACU-AGUGCG-CGaCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.