miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 22163 0.72 0.582563
Target:  5'- aGCACGUgguGGACAcGAUCGCGcCGCgaaUGCg -3'
miRNA:   3'- -CGUGCG---CCUGUaCUAGUGC-GCG---ACGa -5'
6350 3' -55.5 NC_001847.1 + 80977 0.74 0.463634
Target:  5'- uGCGCGCGuuugacGACGcgGAggACGCGCUGCUg -3'
miRNA:   3'- -CGUGCGC------CUGUa-CUagUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 36010 0.79 0.252523
Target:  5'- gGC-CGCGGGCGUGGUgCugGgGCUGCg -3'
miRNA:   3'- -CGuGCGCCUGUACUA-GugCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 63855 0.72 0.572304
Target:  5'- uGCGCGCGGGgG-GcgCAUGCGCgacgGCUg -3'
miRNA:   3'- -CGUGCGCCUgUaCuaGUGCGCGa---CGA- -5'
6350 3' -55.5 NC_001847.1 + 63522 0.8 0.234676
Target:  5'- uGCACGCGcGCGUG-UC-CGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCcUGUACuAGuGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 106726 0.71 0.665315
Target:  5'- -aGCGCGGGCGccGGUUGCGCGCccGCg -3'
miRNA:   3'- cgUGCGCCUGUa-CUAGUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 24512 0.78 0.291549
Target:  5'- cGC-CGUGGGCGUcGGggcUCGCGCGCUGCa -3'
miRNA:   3'- -CGuGCGCCUGUA-CU---AGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 29182 0.71 0.644623
Target:  5'- cUACGCGGACGUGcugccguugCugGgGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUACua-------GugCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 34076 0.71 0.638404
Target:  5'- gGCACGCGGAgcgcguggcggccgcCGUGGcUCGCGCgGCgGCg -3'
miRNA:   3'- -CGUGCGCCU---------------GUACU-AGUGCG-CGaCGa -5'
6350 3' -55.5 NC_001847.1 + 63172 0.71 0.62389
Target:  5'- cGCACGuCGGuCGcGGUCGCGCGCcaugGCc -3'
miRNA:   3'- -CGUGC-GCCuGUaCUAGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 130744 0.72 0.617672
Target:  5'- aGgACGCGGACAgcgccugggccgcgGcgCGCGCGCUcGCg -3'
miRNA:   3'- -CgUGCGCCUGUa-------------CuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 69327 0.72 0.603182
Target:  5'- -gGCGCGGGCc---UCGgGCGCUGCUg -3'
miRNA:   3'- cgUGCGCCUGuacuAGUgCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 97839 0.72 0.592858
Target:  5'- cGCGCGCGGGCug---CGCGCGCcuuauacaaUGCUc -3'
miRNA:   3'- -CGUGCGCCUGuacuaGUGCGCG---------ACGA- -5'
6350 3' -55.5 NC_001847.1 + 35182 0.72 0.56209
Target:  5'- gGCACGCGGcCuucgagGAggagCGCGCGCgGCUg -3'
miRNA:   3'- -CGUGCGCCuGua----CUa---GUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 71179 0.73 0.531769
Target:  5'- gGCACuuccUGGACGccUGG-CACGCGCUGCUg -3'
miRNA:   3'- -CGUGc---GCCUGU--ACUaGUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 94190 0.74 0.492317
Target:  5'- uCGCGCGGGCAgu-UCGagGCGCUGCg -3'
miRNA:   3'- cGUGCGCCUGUacuAGUg-CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 58599 0.74 0.482663
Target:  5'- uGCGCGCGGGCucgccuuUCGCuaGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGuacu---AGUG--CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 35224 0.74 0.453337
Target:  5'- uGCGCGCGGACGUGcugCaggcggccggcggGCGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCUGUACua-G-------------UGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 117410 0.76 0.391766
Target:  5'- uGCGCGCGGugGacgcuUCGCGCGgCUGCg -3'
miRNA:   3'- -CGUGCGCCugUacu--AGUGCGC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 43412 0.77 0.320098
Target:  5'- cGUACGCGGACc---UCGCGCuGCUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuacuAGUGCG-CGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.