Results 41 - 60 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 3' | -55.5 | NC_001847.1 | + | 43294 | 0.77 | 0.320098 |
Target: 5'- cGUGCGCGGGCugcgGAguacgaagCGCGCGCUGCc -3' miRNA: 3'- -CGUGCGCCUGua--CUa-------GUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 80749 | 0.72 | 0.603182 |
Target: 5'- cGCGuCGUGGACuUGGUC-CGCGCcgGCg -3' miRNA: 3'- -CGU-GCGCCUGuACUAGuGCGCGa-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 79317 | 0.71 | 0.665315 |
Target: 5'- uGCGCGUcauGGACGacgacGUCACGCGaCUGCUc -3' miRNA: 3'- -CGUGCG---CCUGUac---UAGUGCGC-GACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 67350 | 0.71 | 0.650838 |
Target: 5'- uCGCGCGGACGUGGcccucggcUCuccguagcucgucCGCGCUGCc -3' miRNA: 3'- cGUGCGCCUGUACU--------AGu------------GCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 89675 | 0.72 | 0.603182 |
Target: 5'- aGCACGCGcGAC-UGG-CGCGCGCuauuUGCg -3' miRNA: 3'- -CGUGCGC-CUGuACUaGUGCGCG----ACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 40128 | 0.74 | 0.454268 |
Target: 5'- uGCGCGUGGGCgaGUGAUUggacacauGCGCGCaGCUg -3' miRNA: 3'- -CGUGCGCCUG--UACUAG--------UGCGCGaCGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 133324 | 0.78 | 0.303433 |
Target: 5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3' miRNA: 3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 24512 | 0.78 | 0.291549 |
Target: 5'- cGC-CGUGGGCGUcGGggcUCGCGCGCUGCa -3' miRNA: 3'- -CGuGCGCCUGUA-CU---AGUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 22083 | 0.74 | 0.492317 |
Target: 5'- -uGCGCaGACGUGcgCcgACGCGCUGCg -3' miRNA: 3'- cgUGCGcCUGUACuaG--UGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 42392 | 0.72 | 0.56209 |
Target: 5'- aGCuCGCGGagccGCAUGuUCGCGCGC-GCUg -3' miRNA: 3'- -CGuGCGCC----UGUACuAGUGCGCGaCGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 7341 | 0.72 | 0.56209 |
Target: 5'- uGCAagaaGCGGugGUagccGUCAgCGCGCUGCUg -3' miRNA: 3'- -CGUg---CGCCugUAc---UAGU-GCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 58599 | 0.74 | 0.482663 |
Target: 5'- uGCGCGCGGGCucgccuuUCGCuaGCGCUGCc -3' miRNA: 3'- -CGUGCGCCUGuacu---AGUG--CGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 88549 | 0.76 | 0.358656 |
Target: 5'- uGCGCGUGG-CGUGAccgcgcUCGCGCGCgGCg -3' miRNA: 3'- -CGUGCGCCuGUACU------AGUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 31528 | 0.71 | 0.634257 |
Target: 5'- -aGCGgGGACGUGccccaggcguuuGUCGCGCGCaUGCc -3' miRNA: 3'- cgUGCgCCUGUAC------------UAGUGCGCG-ACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 71827 | 0.71 | 0.62389 |
Target: 5'- aGCACGcCGcGC-UGAacCACGCGCUGCUg -3' miRNA: 3'- -CGUGC-GCcUGuACUa-GUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 97839 | 0.72 | 0.592858 |
Target: 5'- cGCGCGCGGGCug---CGCGCGCcuuauacaaUGCUc -3' miRNA: 3'- -CGUGCGCCUGuacuaGUGCGCG---------ACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 74489 | 0.71 | 0.643586 |
Target: 5'- aGgGCGCGGACGcGGcCGCGCGCacccucgUGCUg -3' miRNA: 3'- -CgUGCGCCUGUaCUaGUGCGCG-------ACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 30271 | 0.66 | 0.910154 |
Target: 5'- cGCGcCGCGGcGCAgacGA-CACaaGCGCUGCa -3' miRNA: 3'- -CGU-GCGCC-UGUa--CUaGUG--CGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 132284 | 0.71 | 0.665315 |
Target: 5'- cGCGCGUcggccuGGGCGcUGGcgCGCGCGCUGUUc -3' miRNA: 3'- -CGUGCG------CCUGU-ACUa-GUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 34076 | 0.71 | 0.638404 |
Target: 5'- gGCACGCGGAgcgcguggcggccgcCGUGGcUCGCGCgGCgGCg -3' miRNA: 3'- -CGUGCGCCU---------------GUACU-AGUGCG-CGaCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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