Results 41 - 60 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6350 | 3' | -55.5 | NC_001847.1 | + | 77983 | 0.73 | 0.521791 |
Target: 5'- uGCugGCGGGCGgcGAgCGCGCcCUGCUg -3' miRNA: 3'- -CGugCGCCUGUa-CUaGUGCGcGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 71179 | 0.73 | 0.531769 |
Target: 5'- gGCACuuccUGGACGccUGG-CACGCGCUGCUg -3' miRNA: 3'- -CGUGc---GCCUGU--ACUaGUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 74354 | 0.73 | 0.531769 |
Target: 5'- cGCugGUGGcgcGCGUGGUgGCGCGC-GCg -3' miRNA: 3'- -CGugCGCC---UGUACUAgUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 102321 | 0.73 | 0.541816 |
Target: 5'- cCACGCGGGCc---UCGCGCGCUcGCg -3' miRNA: 3'- cGUGCGCCUGuacuAGUGCGCGA-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 58055 | 0.73 | 0.541816 |
Target: 5'- cGCGCGCGGGCcgccgauUGG-CGCGCGC-GCg -3' miRNA: 3'- -CGUGCGCCUGu------ACUaGUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 7341 | 0.72 | 0.56209 |
Target: 5'- uGCAagaaGCGGugGUagccGUCAgCGCGCUGCUg -3' miRNA: 3'- -CGUg---CGCCugUAc---UAGU-GCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 42392 | 0.72 | 0.56209 |
Target: 5'- aGCuCGCGGagccGCAUGuUCGCGCGC-GCUg -3' miRNA: 3'- -CGuGCGCC----UGUACuAGUGCGCGaCGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 35182 | 0.72 | 0.56209 |
Target: 5'- gGCACGCGGcCuucgagGAggagCGCGCGCgGCUg -3' miRNA: 3'- -CGUGCGCCuGua----CUa---GUGCGCGaCGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 113409 | 0.72 | 0.56209 |
Target: 5'- cGCGCGCGGGCcgGcgCcggccCGCGCccUGCUg -3' miRNA: 3'- -CGUGCGCCUGuaCuaGu----GCGCG--ACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 10596 | 0.72 | 0.56209 |
Target: 5'- cGCGCGCGGGCcgGcgCcggccCGCGCccUGCUg -3' miRNA: 3'- -CGUGCGCCUGuaCuaGu----GCGCG--ACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 95118 | 0.72 | 0.572304 |
Target: 5'- -gGCGCGGACGagccUGcaGUCGCcgGCGCUGCg -3' miRNA: 3'- cgUGCGCCUGU----AC--UAGUG--CGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 63855 | 0.72 | 0.572304 |
Target: 5'- uGCGCGCGGGgG-GcgCAUGCGCgacgGCUg -3' miRNA: 3'- -CGUGCGCCUgUaCuaGUGCGCGa---CGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 104933 | 0.72 | 0.582563 |
Target: 5'- gGCGCGCGcGGCuucgGcgCGCGCGCcGCg -3' miRNA: 3'- -CGUGCGC-CUGua--CuaGUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 17381 | 0.72 | 0.582563 |
Target: 5'- gGCGCGCGGugcguCGUGAcggUCACgaccuuGCGCUGUg -3' miRNA: 3'- -CGUGCGCCu----GUACU---AGUG------CGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 22163 | 0.72 | 0.582563 |
Target: 5'- aGCACGUgguGGACAcGAUCGCGcCGCgaaUGCg -3' miRNA: 3'- -CGUGCG---CCUGUaCUAGUGC-GCG---ACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 97839 | 0.72 | 0.592858 |
Target: 5'- cGCGCGCGGGCug---CGCGCGCcuuauacaaUGCUc -3' miRNA: 3'- -CGUGCGCCUGuacuaGUGCGCG---------ACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 80749 | 0.72 | 0.603182 |
Target: 5'- cGCGuCGUGGACuUGGUC-CGCGCcgGCg -3' miRNA: 3'- -CGU-GCGCCUGuACUAGuGCGCGa-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 89675 | 0.72 | 0.603182 |
Target: 5'- aGCACGCGcGAC-UGG-CGCGCGCuauuUGCg -3' miRNA: 3'- -CGUGCGC-CUGuACUaGUGCGCG----ACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 69327 | 0.72 | 0.603182 |
Target: 5'- -gGCGCGGGCc---UCGgGCGCUGCUg -3' miRNA: 3'- cgUGCGCCUGuacuAGUgCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 25209 | 0.72 | 0.603182 |
Target: 5'- cGCGCGCGGccggcaaagaGCAUGAUCG-GCGUcGCg -3' miRNA: 3'- -CGUGCGCC----------UGUACUAGUgCGCGaCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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