miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 77983 0.73 0.521791
Target:  5'- uGCugGCGGGCGgcGAgCGCGCcCUGCUg -3'
miRNA:   3'- -CGugCGCCUGUa-CUaGUGCGcGACGA- -5'
6350 3' -55.5 NC_001847.1 + 74354 0.73 0.531769
Target:  5'- cGCugGUGGcgcGCGUGGUgGCGCGC-GCg -3'
miRNA:   3'- -CGugCGCC---UGUACUAgUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 71179 0.73 0.531769
Target:  5'- gGCACuuccUGGACGccUGG-CACGCGCUGCUg -3'
miRNA:   3'- -CGUGc---GCCUGU--ACUaGUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 102321 0.73 0.541816
Target:  5'- cCACGCGGGCc---UCGCGCGCUcGCg -3'
miRNA:   3'- cGUGCGCCUGuacuAGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 58055 0.73 0.541816
Target:  5'- cGCGCGCGGGCcgccgauUGG-CGCGCGC-GCg -3'
miRNA:   3'- -CGUGCGCCUGu------ACUaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 113409 0.72 0.56209
Target:  5'- cGCGCGCGGGCcgGcgCcggccCGCGCccUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuaCuaGu----GCGCG--ACGA- -5'
6350 3' -55.5 NC_001847.1 + 35182 0.72 0.56209
Target:  5'- gGCACGCGGcCuucgagGAggagCGCGCGCgGCUg -3'
miRNA:   3'- -CGUGCGCCuGua----CUa---GUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 42392 0.72 0.56209
Target:  5'- aGCuCGCGGagccGCAUGuUCGCGCGC-GCUg -3'
miRNA:   3'- -CGuGCGCC----UGUACuAGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 7341 0.72 0.56209
Target:  5'- uGCAagaaGCGGugGUagccGUCAgCGCGCUGCUg -3'
miRNA:   3'- -CGUg---CGCCugUAc---UAGU-GCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 10596 0.72 0.56209
Target:  5'- cGCGCGCGGGCcgGcgCcggccCGCGCccUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuaCuaGu----GCGCG--ACGA- -5'
6350 3' -55.5 NC_001847.1 + 95118 0.72 0.572304
Target:  5'- -gGCGCGGACGagccUGcaGUCGCcgGCGCUGCg -3'
miRNA:   3'- cgUGCGCCUGU----AC--UAGUG--CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 63855 0.72 0.572304
Target:  5'- uGCGCGCGGGgG-GcgCAUGCGCgacgGCUg -3'
miRNA:   3'- -CGUGCGCCUgUaCuaGUGCGCGa---CGA- -5'
6350 3' -55.5 NC_001847.1 + 104933 0.72 0.582563
Target:  5'- gGCGCGCGcGGCuucgGcgCGCGCGCcGCg -3'
miRNA:   3'- -CGUGCGC-CUGua--CuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 22163 0.72 0.582563
Target:  5'- aGCACGUgguGGACAcGAUCGCGcCGCgaaUGCg -3'
miRNA:   3'- -CGUGCG---CCUGUaCUAGUGC-GCG---ACGa -5'
6350 3' -55.5 NC_001847.1 + 17381 0.72 0.582563
Target:  5'- gGCGCGCGGugcguCGUGAcggUCACgaccuuGCGCUGUg -3'
miRNA:   3'- -CGUGCGCCu----GUACU---AGUG------CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 97839 0.72 0.592858
Target:  5'- cGCGCGCGGGCug---CGCGCGCcuuauacaaUGCUc -3'
miRNA:   3'- -CGUGCGCCUGuacuaGUGCGCG---------ACGA- -5'
6350 3' -55.5 NC_001847.1 + 69327 0.72 0.603182
Target:  5'- -gGCGCGGGCc---UCGgGCGCUGCUg -3'
miRNA:   3'- cgUGCGCCUGuacuAGUgCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 89675 0.72 0.603182
Target:  5'- aGCACGCGcGAC-UGG-CGCGCGCuauuUGCg -3'
miRNA:   3'- -CGUGCGC-CUGuACUaGUGCGCG----ACGa -5'
6350 3' -55.5 NC_001847.1 + 25209 0.72 0.603182
Target:  5'- cGCGCGCGGccggcaaagaGCAUGAUCG-GCGUcGCg -3'
miRNA:   3'- -CGUGCGCC----------UGUACUAGUgCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 80749 0.72 0.603182
Target:  5'- cGCGuCGUGGACuUGGUC-CGCGCcgGCg -3'
miRNA:   3'- -CGU-GCGCCUGuACUAGuGCGCGa-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.