miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 27932 0.72 0.609388
Target:  5'- aGgACGCGGACAggccugggccgcgGcgCGCGCGCUcGCg -3'
miRNA:   3'- -CgUGCGCCUGUa------------CuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 87098 0.72 0.613529
Target:  5'- cGCGCGCGGACu------CGCGCUGUUu -3'
miRNA:   3'- -CGUGCGCCUGuacuaguGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 70471 0.72 0.613529
Target:  5'- aCGCGCGGGCGcccggugGAUgGCGUGCUGgUg -3'
miRNA:   3'- cGUGCGCCUGUa------CUAgUGCGCGACgA- -5'
6350 3' -55.5 NC_001847.1 + 130744 0.72 0.617672
Target:  5'- aGgACGCGGACAgcgccugggccgcgGcgCGCGCGCUcGCg -3'
miRNA:   3'- -CgUGCGCCUGUa-------------CuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 110813 0.71 0.62389
Target:  5'- cGCGCGCGG-CGUGG-CGCGCcaccGCUcGCUg -3'
miRNA:   3'- -CGUGCGCCuGUACUaGUGCG----CGA-CGA- -5'
6350 3' -55.5 NC_001847.1 + 71827 0.71 0.62389
Target:  5'- aGCACGcCGcGC-UGAacCACGCGCUGCUg -3'
miRNA:   3'- -CGUGC-GCcUGuACUa-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 41476 0.71 0.62389
Target:  5'- uGCACGCGcGGCAUGcgCACGaaGCaGCUc -3'
miRNA:   3'- -CGUGCGC-CUGUACuaGUGCg-CGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 71622 0.71 0.62389
Target:  5'- aGCAgCGCGGACA----CGCGCGCgUGCa -3'
miRNA:   3'- -CGU-GCGCCUGUacuaGUGCGCG-ACGa -5'
6350 3' -55.5 NC_001847.1 + 63172 0.71 0.62389
Target:  5'- cGCACGuCGGuCGcGGUCGCGCGCcaugGCc -3'
miRNA:   3'- -CGUGC-GCCuGUaCUAGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 3803 0.71 0.634257
Target:  5'- cGCACGCGGcCGggcggcGGcgGCGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCuGUa-----CUagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 106616 0.71 0.634257
Target:  5'- cGCACGCGGcCGggcggcGGcgGCGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCuGUa-----CUagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 60645 0.71 0.634257
Target:  5'- aGCGCGCGGcGCAgg--CGCG-GCUGCUg -3'
miRNA:   3'- -CGUGCGCC-UGUacuaGUGCgCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 31528 0.71 0.634257
Target:  5'- -aGCGgGGACGUGccccaggcguuuGUCGCGCGCaUGCc -3'
miRNA:   3'- cgUGCgCCUGUAC------------UAGUGCGCG-ACGa -5'
6350 3' -55.5 NC_001847.1 + 15305 0.71 0.638404
Target:  5'- uGCGCGCGGgcgugcgcgacccguACAUGAUCgcggccauccGCGCGCagUGCc -3'
miRNA:   3'- -CGUGCGCC---------------UGUACUAG----------UGCGCG--ACGa -5'
6350 3' -55.5 NC_001847.1 + 34076 0.71 0.638404
Target:  5'- gGCACGCGGAgcgcguggcggccgcCGUGGcUCGCGCgGCgGCg -3'
miRNA:   3'- -CGUGCGCCU---------------GUACU-AGUGCG-CGaCGa -5'
6350 3' -55.5 NC_001847.1 + 74489 0.71 0.643586
Target:  5'- aGgGCGCGGACGcGGcCGCGCGCacccucgUGCUg -3'
miRNA:   3'- -CgUGCGCCUGUaCUaGUGCGCG-------ACGA- -5'
6350 3' -55.5 NC_001847.1 + 69437 0.71 0.643586
Target:  5'- aGCGCggcggugGCGGACGgcgGcgCGCGCGCgGCg -3'
miRNA:   3'- -CGUG-------CGCCUGUa--CuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 29182 0.71 0.644623
Target:  5'- cUACGCGGACGUGcugccguugCugGgGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUACua-------GugCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 106118 0.71 0.644623
Target:  5'- gGCGCGCGcGGCucUGggCGCGauaGCUGCg -3'
miRNA:   3'- -CGUGCGC-CUGu-ACuaGUGCg--CGACGa -5'
6350 3' -55.5 NC_001847.1 + 44331 0.71 0.644623
Target:  5'- uGCcCGcCGGGCGUGAUUaACGCGCgcccgggGCUg -3'
miRNA:   3'- -CGuGC-GCCUGUACUAG-UGCGCGa------CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.