Results 61 - 80 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 3' | -55.5 | NC_001847.1 | + | 59880 | 0.66 | 0.881713 |
Target: 5'- gGCGCGCGGccuccGCGUuggcgaggagggcgGcgCGCGCGCgcgGCg -3' miRNA: 3'- -CGUGCGCC-----UGUA--------------CuaGUGCGCGa--CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 48625 | 0.66 | 0.880285 |
Target: 5'- aGCACGCGGGCGcccagccgcCGCGCgacggugcagcgccGCUGCa -3' miRNA: 3'- -CGUGCGCCUGUacua-----GUGCG--------------CGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 21193 | 0.67 | 0.879568 |
Target: 5'- cGCGCccgGCGG-CGUaggagacgccgccgcGAcCGCGCGCUGCUu -3' miRNA: 3'- -CGUG---CGCCuGUA---------------CUaGUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 77329 | 0.67 | 0.876676 |
Target: 5'- -gACGCgGGGCAc---UGCGCGCUGCUg -3' miRNA: 3'- cgUGCG-CCUGUacuaGUGCGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 59373 | 0.67 | 0.876676 |
Target: 5'- aGCcCGCGGcCGUGuUCAccCGCGCgGCg -3' miRNA: 3'- -CGuGCGCCuGUACuAGU--GCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 54228 | 0.67 | 0.876676 |
Target: 5'- -gGCGUGGACugucugcucGUGggCA-GCGCUGCg -3' miRNA: 3'- cgUGCGCCUG---------UACuaGUgCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 84143 | 0.67 | 0.876676 |
Target: 5'- aGCugGCGuGGucCGUaAUCGCGCGCUcgaGCUg -3' miRNA: 3'- -CGugCGC-CU--GUAcUAGUGCGCGA---CGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 104432 | 0.67 | 0.876676 |
Target: 5'- cCGCGCGGGCGUccagGAgCGcCGgGCUGCc -3' miRNA: 3'- cGUGCGCCUGUA----CUaGU-GCgCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 30740 | 0.67 | 0.876676 |
Target: 5'- cGCGCGCuGGCccGAgcgGCGCGCUgGCg -3' miRNA: 3'- -CGUGCGcCUGuaCUag-UGCGCGA-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 98726 | 0.67 | 0.876676 |
Target: 5'- gGCGCGCGucGCAgGGUCuGCGCGCgagUGCa -3' miRNA: 3'- -CGUGCGCc-UGUaCUAG-UGCGCG---ACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 47845 | 0.67 | 0.876676 |
Target: 5'- cCACGUcgcaGGA---GGUCGCGUGCUGCg -3' miRNA: 3'- cGUGCG----CCUguaCUAGUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 122676 | 0.67 | 0.876676 |
Target: 5'- cCACGCGGGaagccgcgGAggcuccgccgCGCGCGCUGUg -3' miRNA: 3'- cGUGCGCCUgua-----CUa---------GUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 34700 | 0.67 | 0.876676 |
Target: 5'- gGCGCGaGGACuUGcgCGcCGCGCUGg- -3' miRNA: 3'- -CGUGCgCCUGuACuaGU-GCGCGACga -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 97373 | 0.67 | 0.876676 |
Target: 5'- ---aGUGGAgcUGAUCgcgaACGCGCUGCg -3' miRNA: 3'- cgugCGCCUguACUAG----UGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 133553 | 0.67 | 0.876676 |
Target: 5'- cGCGCGCuGGCccGAgcgGCGCGCUgGCg -3' miRNA: 3'- -CGUGCGcCUGuaCUag-UGCGCGA-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 2353 | 0.67 | 0.875947 |
Target: 5'- uGCACG-GGccGCAUGAgguccagUCGCGCGCccGCg -3' miRNA: 3'- -CGUGCgCC--UGUACU-------AGUGCGCGa-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 97813 | 0.67 | 0.86929 |
Target: 5'- cGCGCGUGGccGCGUcGggCGCGUGCcGCc -3' miRNA: 3'- -CGUGCGCC--UGUA-CuaGUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 73068 | 0.67 | 0.86929 |
Target: 5'- cGCGcCGCGGGCGcgGAagUCgACGCGC-GCa -3' miRNA: 3'- -CGU-GCGCCUGUa-CU--AG-UGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 96629 | 0.67 | 0.86929 |
Target: 5'- uGCGCGgGGGCcgGcgggUACGCGUcgUGCg -3' miRNA: 3'- -CGUGCgCCUGuaCua--GUGCGCG--ACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 14715 | 0.67 | 0.86929 |
Target: 5'- aCGCGCGGGCAgGAggcgaACGCGgucguCUGCa -3' miRNA: 3'- cGUGCGCCUGUaCUag---UGCGC-----GACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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