miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 67350 0.71 0.650838
Target:  5'- uCGCGCGGACGUGGcccucggcUCuccguagcucgucCGCGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUACU--------AGu------------GCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 35224 0.74 0.453337
Target:  5'- uGCGCGCGGACGUGcugCaggcggccggcggGCGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCUGUACua-G-------------UGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 25209 0.72 0.603182
Target:  5'- cGCGCGCGGccggcaaagaGCAUGAUCG-GCGUcGCg -3'
miRNA:   3'- -CGUGCGCC----------UGUACUAGUgCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 70471 0.72 0.613529
Target:  5'- aCGCGCGGGCGcccggugGAUgGCGUGCUGgUg -3'
miRNA:   3'- cGUGCGCCUGUa------CUAgUGCGCGACgA- -5'
6350 3' -55.5 NC_001847.1 + 130744 0.72 0.617672
Target:  5'- aGgACGCGGACAgcgccugggccgcgGcgCGCGCGCUcGCg -3'
miRNA:   3'- -CgUGCGCCUGUa-------------CuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 72588 0.76 0.391766
Target:  5'- -uGCGCGGGC-UGGgccaaaACGCGCUGCUg -3'
miRNA:   3'- cgUGCGCCUGuACUag----UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 10174 0.74 0.490379
Target:  5'- cGCGCGCGG-CuuaagcaGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCuGuacuag-UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 35182 0.72 0.56209
Target:  5'- gGCACGCGGcCuucgagGAggagCGCGCGCgGCUg -3'
miRNA:   3'- -CGUGCGCCuGua----CUa---GUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 113409 0.72 0.56209
Target:  5'- cGCGCGCGGGCcgGcgCcggccCGCGCccUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuaCuaGu----GCGCG--ACGA- -5'
6350 3' -55.5 NC_001847.1 + 94190 0.74 0.492317
Target:  5'- uCGCGCGGGCAgu-UCGagGCGCUGCg -3'
miRNA:   3'- cGUGCGCCUGUacuAGUg-CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 133324 0.78 0.303433
Target:  5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3'
miRNA:   3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 43294 0.77 0.320098
Target:  5'- cGUGCGCGGGCugcgGAguacgaagCGCGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCUGua--CUa-------GUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 79317 0.71 0.665315
Target:  5'- uGCGCGUcauGGACGacgacGUCACGCGaCUGCUc -3'
miRNA:   3'- -CGUGCG---CCUGUac---UAGUGCGC-GACGA- -5'
6350 3' -55.5 NC_001847.1 + 36034 0.7 0.716403
Target:  5'- nCGCGCGGACGaGcacUACGCGCgGCUg -3'
miRNA:   3'- cGUGCGCCUGUaCua-GUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 87859 0.69 0.745264
Target:  5'- gGCcCGCGGGCcuGUGGUCGCuguggccGCGCgGCUu -3'
miRNA:   3'- -CGuGCGCCUG--UACUAGUG-------CGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 54199 0.69 0.746245
Target:  5'- cGCuCGCGGACAag--CugGCGCaGCUg -3'
miRNA:   3'- -CGuGCGCCUGUacuaGugCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 37231 0.7 0.726437
Target:  5'- -gGCGCGGACGacccggcgGAcgGCGCGCUGUUc -3'
miRNA:   3'- cgUGCGCCUGUa-------CUagUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 29182 0.71 0.644623
Target:  5'- cUACGCGGACGUGcugccguugCugGgGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUACua-------GugCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 13123 0.7 0.685897
Target:  5'- gGCGCGCGGGCG-GcgC-CGCGCcGCc -3'
miRNA:   3'- -CGUGCGCCUGUaCuaGuGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 133142 0.7 0.685897
Target:  5'- uGCGCGUGGugGUGcUCuACGaccCGCUGCc -3'
miRNA:   3'- -CGUGCGCCugUACuAG-UGC---GCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.