miRNA display CGI


Results 61 - 80 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 97839 0.72 0.592858
Target:  5'- cGCGCGCGGGCug---CGCGCGCcuuauacaaUGCUc -3'
miRNA:   3'- -CGUGCGCCUGuacuaGUGCGCG---------ACGA- -5'
6350 3' -55.5 NC_001847.1 + 70471 0.72 0.613529
Target:  5'- aCGCGCGGGCGcccggugGAUgGCGUGCUGgUg -3'
miRNA:   3'- cGUGCGCCUGUa------CUAgUGCGCGACgA- -5'
6350 3' -55.5 NC_001847.1 + 133324 0.78 0.303433
Target:  5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3'
miRNA:   3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 10791 0.76 0.356253
Target:  5'- gGUACGCGGGCcUGuuuuugggcuacugcCGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuACua-------------GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 72313 0.76 0.391766
Target:  5'- cGCGCGCGuGGCGgugGAcgCggACGCGCUGCUg -3'
miRNA:   3'- -CGUGCGC-CUGUa--CUa-G--UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 40128 0.74 0.454268
Target:  5'- uGCGCGUGGGCgaGUGAUUggacacauGCGCGCaGCUg -3'
miRNA:   3'- -CGUGCGCCUG--UACUAG--------UGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 10174 0.74 0.490379
Target:  5'- cGCGCGCGG-CuuaagcaGCGCGCUGCUg -3'
miRNA:   3'- -CGUGCGCCuGuacuag-UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 131506 0.74 0.50206
Target:  5'- cGCugGUGGACcUGGUguaCGCGCGCcGCg -3'
miRNA:   3'- -CGugCGCCUGuACUA---GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 74354 0.73 0.531769
Target:  5'- cGCugGUGGcgcGCGUGGUgGCGCGC-GCg -3'
miRNA:   3'- -CGugCGCC---UGUACUAgUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 42392 0.72 0.56209
Target:  5'- aGCuCGCGGagccGCAUGuUCGCGCGC-GCUg -3'
miRNA:   3'- -CGuGCGCC----UGUACuAGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 13744 0.69 0.746245
Target:  5'- -gGCGUGGGgcUGAUCGCGCaGCgGCUg -3'
miRNA:   3'- cgUGCGCCUguACUAGUGCG-CGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 73555 0.69 0.736388
Target:  5'- -gGCGCGGGCGUGu---CGCGgaGCa -3'
miRNA:   3'- cgUGCGCCUGUACuaguGCGCgaCGa -5'
6350 3' -55.5 NC_001847.1 + 71827 0.71 0.62389
Target:  5'- aGCACGcCGcGC-UGAacCACGCGCUGCUg -3'
miRNA:   3'- -CGUGC-GCcUGuACUa-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 60645 0.71 0.634257
Target:  5'- aGCGCGCGGcGCAgg--CGCG-GCUGCUg -3'
miRNA:   3'- -CGUGCGCC-UGUacuaGUGCgCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 29182 0.71 0.644623
Target:  5'- cUACGCGGACGUGcugccguugCugGgGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUACua-------GugCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 106726 0.71 0.665315
Target:  5'- -aGCGCGGGCGccGGUUGCGCGCccGCg -3'
miRNA:   3'- cgUGCGCCUGUa-CUAGUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 63784 0.71 0.665315
Target:  5'- cCGCGCGGACGcgggcuuucUGGUCGCuguGCGCaaUGCUu -3'
miRNA:   3'- cGUGCGCCUGU---------ACUAGUG---CGCG--ACGA- -5'
6350 3' -55.5 NC_001847.1 + 44908 0.7 0.685897
Target:  5'- cGgACGgGGGCGUGcgCgacGCGCGCgUGCUg -3'
miRNA:   3'- -CgUGCgCCUGUACuaG---UGCGCG-ACGA- -5'
6350 3' -55.5 NC_001847.1 + 36034 0.7 0.716403
Target:  5'- nCGCGCGGACGaGcacUACGCGCgGCUg -3'
miRNA:   3'- cGUGCGCCUGUaCua-GUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 134819 0.7 0.726437
Target:  5'- -gACGCGGGCGUGGa-GCGCGaaGCUc -3'
miRNA:   3'- cgUGCGCCUGUACUagUGCGCgaCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.