miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 31109 0.68 0.793801
Target:  5'- gGCcUGCGGGCGg---CGCGCGCUGg- -3'
miRNA:   3'- -CGuGCGCCUGUacuaGUGCGCGACga -5'
6350 3' -55.5 NC_001847.1 + 31217 0.67 0.837625
Target:  5'- aGgGCGCGG-CGUGggCGCGCGaaaGCg -3'
miRNA:   3'- -CgUGCGCCuGUACuaGUGCGCga-CGa -5'
6350 3' -55.5 NC_001847.1 + 31433 0.67 0.837625
Target:  5'- cGCG-GCGGACGUcg-CugGCGCUGgUg -3'
miRNA:   3'- -CGUgCGCCUGUAcuaGugCGCGACgA- -5'
6350 3' -55.5 NC_001847.1 + 31528 0.71 0.634257
Target:  5'- -aGCGgGGACGUGccccaggcguuuGUCGCGCGCaUGCc -3'
miRNA:   3'- cgUGCgCCUGUAC------------UAGUGCGCG-ACGa -5'
6350 3' -55.5 NC_001847.1 + 31717 0.69 0.784552
Target:  5'- -gGCGCGGGCcg---CGCGCcGCUGCg -3'
miRNA:   3'- cgUGCGCCUGuacuaGUGCG-CGACGa -5'
6350 3' -55.5 NC_001847.1 + 31754 0.68 0.811841
Target:  5'- gGCGCGUGGucaGCGUGcacccgCGCGCGCcgGCc -3'
miRNA:   3'- -CGUGCGCC---UGUACua----GUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 31822 0.67 0.861686
Target:  5'- gGCGCGgGGGCAgagugcgagGAcccuacguUCGCGCGCccggGCUc -3'
miRNA:   3'- -CGUGCgCCUGUa--------CU--------AGUGCGCGa---CGA- -5'
6350 3' -55.5 NC_001847.1 + 32006 0.7 0.726437
Target:  5'- -gACGCGGGCGUGGa-GCGCGaaGCUc -3'
miRNA:   3'- cgUGCGCCUGUACUagUGCGCgaCGA- -5'
6350 3' -55.5 NC_001847.1 + 32037 0.67 0.861686
Target:  5'- gGCGCGgGGACG-GcgCcCGCGCggGCUc -3'
miRNA:   3'- -CGUGCgCCUGUaCuaGuGCGCGa-CGA- -5'
6350 3' -55.5 NC_001847.1 + 32175 0.68 0.811841
Target:  5'- uGCGCgGCGGAgCuugGcgCGCGCGCgGCg -3'
miRNA:   3'- -CGUG-CGCCU-Gua-CuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 32236 0.67 0.857021
Target:  5'- cGCACGCGG-CGUcGAUagccgcugacgcagaCGCGUGCgugGCUc -3'
miRNA:   3'- -CGUGCGCCuGUA-CUA---------------GUGCGCGa--CGA- -5'
6350 3' -55.5 NC_001847.1 + 32992 0.69 0.775163
Target:  5'- uGCG-GCGGGCcgcgccgccGUGGUCGCGCGgaGUg -3'
miRNA:   3'- -CGUgCGCCUG---------UACUAGUGCGCgaCGa -5'
6350 3' -55.5 NC_001847.1 + 33038 0.7 0.710347
Target:  5'- cGgACGCGGcgcaggaguuuauugACcgGGUCGCGCGCgGCc -3'
miRNA:   3'- -CgUGCGCC---------------UGuaCUAGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 33565 0.74 0.482663
Target:  5'- cGCACGCGGGgGgcGUCugGCGCgGCc -3'
miRNA:   3'- -CGUGCGCCUgUacUAGugCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 33654 0.67 0.837625
Target:  5'- cGCGCGCGcGCGUGGcCGCggcccGCGCgggGCUa -3'
miRNA:   3'- -CGUGCGCcUGUACUaGUG-----CGCGa--CGA- -5'
6350 3' -55.5 NC_001847.1 + 34076 0.71 0.638404
Target:  5'- gGCACGCGGAgcgcguggcggccgcCGUGGcUCGCGCgGCgGCg -3'
miRNA:   3'- -CGUGCGCCU---------------GUACU-AGUGCG-CGaCGa -5'
6350 3' -55.5 NC_001847.1 + 34273 0.68 0.802901
Target:  5'- gGCGCGCGG-CGgcUGggCGcCGCGCUcGCg -3'
miRNA:   3'- -CGUGCGCCuGU--ACuaGU-GCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 34700 0.67 0.876676
Target:  5'- gGCGCGaGGACuUGcgCGcCGCGCUGg- -3'
miRNA:   3'- -CGUGCgCCUGuACuaGU-GCGCGACga -5'
6350 3' -55.5 NC_001847.1 + 35182 0.72 0.56209
Target:  5'- gGCACGCGGcCuucgagGAggagCGCGCGCgGCUg -3'
miRNA:   3'- -CGUGCGCCuGua----CUa---GUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 35224 0.74 0.453337
Target:  5'- uGCGCGCGGACGUGcugCaggcggccggcggGCGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCUGUACua-G-------------UGCGCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.