miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 85985 0.66 0.89077
Target:  5'- -gGCGCGuGAcCGUGGUcCGCGCGCcgauggGCUc -3'
miRNA:   3'- cgUGCGC-CU-GUACUA-GUGCGCGa-----CGA- -5'
6350 3' -55.5 NC_001847.1 + 105766 0.66 0.884541
Target:  5'- cGCGCGCGG-CAgcuccggccgcccgcGGUCGC-CGCUGUUu -3'
miRNA:   3'- -CGUGCGCCuGUa--------------CUAGUGcGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 58918 0.67 0.837625
Target:  5'- gGguCG-GGACGaGGUCggcacGCGCGCUGCUc -3'
miRNA:   3'- -CguGCgCCUGUaCUAG-----UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 104432 0.67 0.876676
Target:  5'- cCGCGCGGGCGUccagGAgCGcCGgGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUA----CUaGU-GCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 122676 0.67 0.876676
Target:  5'- cCACGCGGGaagccgcgGAggcuccgccgCGCGCGCUGUg -3'
miRNA:   3'- cGUGCGCCUgua-----CUa---------GUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 116318 0.67 0.845847
Target:  5'- cGCGCGCgaGGACgccGUGcccaugCGCGCGCUgGCg -3'
miRNA:   3'- -CGUGCG--CCUG---UACua----GUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 67285 0.67 0.85387
Target:  5'- cGCGCGgGGACuUGGUgGC-CGCgGCg -3'
miRNA:   3'- -CGUGCgCCUGuACUAgUGcGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 102989 0.67 0.845847
Target:  5'- cGCACGCcgucgcGGCGUGcgCGgGCGCgGCg -3'
miRNA:   3'- -CGUGCGc-----CUGUACuaGUgCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 63229 0.67 0.845847
Target:  5'- uGCGCGCGccgcgcGCcgGGUC-CGCcGCUGCa -3'
miRNA:   3'- -CGUGCGCc-----UGuaCUAGuGCG-CGACGa -5'
6350 3' -55.5 NC_001847.1 + 29355 0.67 0.845847
Target:  5'- aGCGCGCGGcCccGG-CG-GCGCUGCg -3'
miRNA:   3'- -CGUGCGCCuGuaCUaGUgCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 89242 0.67 0.845847
Target:  5'- aCACGCGGcGCuUGGUCgACGUGCuuaUGCa -3'
miRNA:   3'- cGUGCGCC-UGuACUAG-UGCGCG---ACGa -5'
6350 3' -55.5 NC_001847.1 + 104652 0.67 0.837625
Target:  5'- cGCGCGCccgaGGGCcgcgccGAUCGCgucccaGCGCUGCa -3'
miRNA:   3'- -CGUGCG----CCUGua----CUAGUG------CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 42697 0.67 0.852282
Target:  5'- -gACGUGGACAccucccagcccgGAUUugGCGCgGCg -3'
miRNA:   3'- cgUGCGCCUGUa-----------CUAGugCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 35872 0.67 0.837625
Target:  5'- cGCAUGUGGGCcgGcgCAaauauacuccCGCGCcgGCUg -3'
miRNA:   3'- -CGUGCGCCUGuaCuaGU----------GCGCGa-CGA- -5'
6350 3' -55.5 NC_001847.1 + 59587 0.67 0.834283
Target:  5'- gGCGCucaCGGGCAgcucggccgccgaGAUCGCGCGgUGCg -3'
miRNA:   3'- -CGUGc--GCCUGUa------------CUAGUGCGCgACGa -5'
6350 3' -55.5 NC_001847.1 + 62988 0.67 0.85387
Target:  5'- aCACGCGGuCGUaGUgCACGCccauGCUGCa -3'
miRNA:   3'- cGUGCGCCuGUAcUA-GUGCG----CGACGa -5'
6350 3' -55.5 NC_001847.1 + 88367 0.67 0.85387
Target:  5'- gGCGCGCGGGCGcggcgGAcCGgcccCGCGCgGCg -3'
miRNA:   3'- -CGUGCGCCUGUa----CUaGU----GCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 32236 0.67 0.857021
Target:  5'- cGCACGCGG-CGUcGAUagccgcugacgcagaCGCGUGCgugGCUc -3'
miRNA:   3'- -CGUGCGCCuGUA-CUA---------------GUGCGCGa--CGA- -5'
6350 3' -55.5 NC_001847.1 + 116254 0.67 0.845847
Target:  5'- gGUACGCGGcGCugcgGAcUCugGCGCcGCUc -3'
miRNA:   3'- -CGUGCGCC-UGua--CU-AGugCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 69099 0.67 0.85387
Target:  5'- cGCGCGCGGACGggcGggC-CGCGUucucgGCg -3'
miRNA:   3'- -CGUGCGCCUGUa--CuaGuGCGCGa----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.