miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 27932 0.72 0.609388
Target:  5'- aGgACGCGGACAggccugggccgcgGcgCGCGCGCUcGCg -3'
miRNA:   3'- -CgUGCGCCUGUa------------CuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 28009 0.66 0.897469
Target:  5'- aGCGCGCGG-CGUGccgCGCuuacgaGCGcCUGCa -3'
miRNA:   3'- -CGUGCGCCuGUACua-GUG------CGC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 28060 0.71 0.663249
Target:  5'- uGCugGCGGAaaaccugcccGGUCugGUGCUGUg -3'
miRNA:   3'- -CGugCGCCUgua-------CUAGugCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 28693 0.74 0.50206
Target:  5'- cGCugGUGGACcUGGUguaCGCGCGCcGCg -3'
miRNA:   3'- -CGugCGCCUGuACUA---GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 28733 0.7 0.726437
Target:  5'- gGC-CGCGGGCAgcGUCgccGCGCGCgUGCg -3'
miRNA:   3'- -CGuGCGCCUGUacUAG---UGCGCG-ACGa -5'
6350 3' -55.5 NC_001847.1 + 29040 0.66 0.89077
Target:  5'- cGCGCGCGccGGCAg----ACGUGCUGCa -3'
miRNA:   3'- -CGUGCGC--CUGUacuagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 29107 0.68 0.811841
Target:  5'- -gGCGCGGGCG-GcgCGCGagcgGCUGCg -3'
miRNA:   3'- cgUGCGCCUGUaCuaGUGCg---CGACGa -5'
6350 3' -55.5 NC_001847.1 + 29182 0.71 0.644623
Target:  5'- cUACGCGGACGUGcugccguugCugGgGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUACua-------GugCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 29327 0.68 0.793801
Target:  5'- cGCgACGCGGugGag--CGCGCGCgGCUc -3'
miRNA:   3'- -CG-UGCGCCugUacuaGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 29355 0.67 0.845847
Target:  5'- aGCGCGCGGcCccGG-CG-GCGCUGCg -3'
miRNA:   3'- -CGUGCGCCuGuaCUaGUgCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 29374 0.66 0.883838
Target:  5'- cCGCGCGGcgGCcgGAgcugcCGCGCGCgagGCc -3'
miRNA:   3'- cGUGCGCC--UGuaCUa----GUGCGCGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 29471 0.71 0.665315
Target:  5'- cGCGCGUcggccuGGGCGcUGGcgCGCGCGCUGUUc -3'
miRNA:   3'- -CGUGCG------CCUGU-ACUa-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 30271 0.66 0.910154
Target:  5'- cGCGcCGCGGcGCAgacGA-CACaaGCGCUGCa -3'
miRNA:   3'- -CGU-GCGCC-UGUa--CUaGUG--CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 30329 0.7 0.685897
Target:  5'- uGCGCGUGGugGUGcUCuACGaccCGCUGCc -3'
miRNA:   3'- -CGUGCGCCugUACuAG-UGC---GCGACGa -5'
6350 3' -55.5 NC_001847.1 + 30337 0.68 0.829212
Target:  5'- gGCGgGCuGGACGacGAgcacCGCGCGUUGCUg -3'
miRNA:   3'- -CGUgCG-CCUGUa-CUa---GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 30419 0.68 0.811841
Target:  5'- cGCGCcgcgGCGGGCucucgCACGCGCUcGCg -3'
miRNA:   3'- -CGUG----CGCCUGuacuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 30511 0.78 0.303433
Target:  5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3'
miRNA:   3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 30740 0.67 0.876676
Target:  5'- cGCGCGCuGGCccGAgcgGCGCGCUgGCg -3'
miRNA:   3'- -CGUGCGcCUGuaCUag-UGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 30979 0.66 0.910154
Target:  5'- gGCGCaaGGACAUGGcCGCGCaggGCgcgGCg -3'
miRNA:   3'- -CGUGcgCCUGUACUaGUGCG---CGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 31028 0.66 0.900083
Target:  5'- cGCGCGCGccggcaacgccggccGACGUcgcGGUCGC-CGCUGUg -3'
miRNA:   3'- -CGUGCGC---------------CUGUA---CUAGUGcGCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.