miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 116489 0.66 0.897469
Target:  5'- cGCGgGCGGGCAcGG-CGuCGCGCUcGCc -3'
miRNA:   3'- -CGUgCGCCUGUaCUaGU-GCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 116449 0.68 0.811841
Target:  5'- cGCugGCGGugAcgcGggC-CGUGCUGCg -3'
miRNA:   3'- -CGugCGCCugUa--CuaGuGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 116445 0.66 0.903932
Target:  5'- gGCG-GUGGGCGcUGGcgCACGCGCgGCg -3'
miRNA:   3'- -CGUgCGCCUGU-ACUa-GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 116362 0.68 0.802901
Target:  5'- aGCugGUGuGCGUGGUgCugGCGC-GCUa -3'
miRNA:   3'- -CGugCGCcUGUACUA-GugCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 116318 0.67 0.845847
Target:  5'- cGCGCGCgaGGACgccGUGcccaugCGCGCGCUgGCg -3'
miRNA:   3'- -CGUGCG--CCUG---UACua----GUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 116254 0.67 0.845847
Target:  5'- gGUACGCGGcGCugcgGAcUCugGCGCcGCUc -3'
miRNA:   3'- -CGUGCGCC-UGua--CU-AGugCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 115906 0.69 0.756
Target:  5'- cGgACGCGGACggGAUCGaaggggGgGCUGCc -3'
miRNA:   3'- -CgUGCGCCUGuaCUAGUg-----CgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 115584 0.78 0.278039
Target:  5'- gGCGauCGCGGGCGUcGAUCGCGUGCgGCUu -3'
miRNA:   3'- -CGU--GCGCCUGUA-CUAGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 114480 0.69 0.765642
Target:  5'- aGCugGCGGACGUc-UC-CGCcCUGCUg -3'
miRNA:   3'- -CGugCGCCUGUAcuAGuGCGcGACGA- -5'
6350 3' -55.5 NC_001847.1 + 113409 0.72 0.56209
Target:  5'- cGCGCGCGGGCcgGcgCcggccCGCGCccUGCUg -3'
miRNA:   3'- -CGUGCGCCUGuaCuaGu----GCGCG--ACGA- -5'
6350 3' -55.5 NC_001847.1 + 111324 0.68 0.811841
Target:  5'- cGCGCGCuGGACcgcgagcaGUGGUCGguggccgcCGCGCUGg- -3'
miRNA:   3'- -CGUGCG-CCUG--------UACUAGU--------GCGCGACga -5'
6350 3' -55.5 NC_001847.1 + 110813 0.71 0.62389
Target:  5'- cGCGCGCGG-CGUGG-CGCGCcaccGCUcGCUg -3'
miRNA:   3'- -CGUGCGCCuGUACUaGUGCG----CGA-CGA- -5'
6350 3' -55.5 NC_001847.1 + 109951 0.66 0.89077
Target:  5'- cGCGCGCgGGGCucg--CugGCcaGCUGCUa -3'
miRNA:   3'- -CGUGCG-CCUGuacuaGugCG--CGACGA- -5'
6350 3' -55.5 NC_001847.1 + 109368 0.7 0.685897
Target:  5'- aGCACGCGGA-AUGggCGCaGCuggGCUGCg -3'
miRNA:   3'- -CGUGCGCCUgUACuaGUG-CG---CGACGa -5'
6350 3' -55.5 NC_001847.1 + 108430 0.68 0.829212
Target:  5'- uGCGCGUuccuGGACGUGG--ACGCcgaGCUGCg -3'
miRNA:   3'- -CGUGCG----CCUGUACUagUGCG---CGACGa -5'
6350 3' -55.5 NC_001847.1 + 107139 0.69 0.736388
Target:  5'- -aGCGCGGcACGc---CGCGCGCUGCa -3'
miRNA:   3'- cgUGCGCC-UGUacuaGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 106792 0.68 0.811841
Target:  5'- aGCA-GCGGGCGgaUGAcggC-CGCGCUGCc -3'
miRNA:   3'- -CGUgCGCCUGU--ACUa--GuGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 106726 0.71 0.665315
Target:  5'- -aGCGCGGGCGccGGUUGCGCGCccGCg -3'
miRNA:   3'- cgUGCGCCUGUa-CUAGUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 106616 0.71 0.634257
Target:  5'- cGCACGCGGcCGggcggcGGcgGCGCGCUGCc -3'
miRNA:   3'- -CGUGCGCCuGUa-----CUagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 106118 0.71 0.644623
Target:  5'- gGCGCGCGcGGCucUGggCGCGauaGCUGCg -3'
miRNA:   3'- -CGUGCGC-CUGu-ACuaGUGCg--CGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.