Results 101 - 120 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 53755 | 0.68 | 0.475338 |
Target: 5'- cGGauCCgGCGGcccgaGGCggCGAGGGCGGCAg -3' miRNA: 3'- -CC--GGaCGCCa----CCGagGCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 69375 | 0.68 | 0.475338 |
Target: 5'- cGGUCUuugcgGCGGUGGCgCUGccGGCGGCc -3' miRNA: 3'- -CCGGA-----CGCCACCGaGGCucUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 5810 | 0.68 | 0.475338 |
Target: 5'- cGCUUGCGcuUGGCgcgCCGGGuGCGuGCAg -3' miRNA: 3'- cCGGACGCc-ACCGa--GGCUCuCGC-CGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 53606 | 0.68 | 0.475338 |
Target: 5'- gGGCCa-CGGUGGCgggCgGcGGGGUGGCAc -3' miRNA: 3'- -CCGGacGCCACCGa--GgC-UCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 53852 | 0.68 | 0.475338 |
Target: 5'- cGGCgCUgGCGGcgcUGGCggcgCCGAccgccgcggGGGCGGCGg -3' miRNA: 3'- -CCG-GA-CGCC---ACCGa---GGCU---------CUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 85136 | 0.68 | 0.474428 |
Target: 5'- gGGCCcagcagGCGGUgggcgcgcgGGCUCCucucgcgGAGGGCGuGCAn -3' miRNA: 3'- -CCGGa-----CGCCA---------CCGAGG-------CUCUCGC-CGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 18519 | 0.68 | 0.467181 |
Target: 5'- aGGCCaGCGcugcgGGCgcgccgccguccgcgCCGcAGAGCGGCAg -3' miRNA: 3'- -CCGGaCGCca---CCGa--------------GGC-UCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 72696 | 0.68 | 0.466279 |
Target: 5'- aGGCCggggagaGCGGccGC-CCGGuGGGCGGCAg -3' miRNA: 3'- -CCGGa------CGCCacCGaGGCU-CUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 28072 | 0.68 | 0.466279 |
Target: 5'- aGGCCgaaGCGG-GGacugaggCgGGGGGCGGCGg -3' miRNA: 3'- -CCGGa--CGCCaCCga-----GgCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 59439 | 0.68 | 0.466279 |
Target: 5'- cGGCCcGCGGcccgUGGC-CCGA--GCGGCu -3' miRNA: 3'- -CCGGaCGCC----ACCGaGGCUcuCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 95910 | 0.68 | 0.466279 |
Target: 5'- cGCCUGaCGGUGGUggaacgagcUCUGAGccCGGCGc -3' miRNA: 3'- cCGGAC-GCCACCG---------AGGCUCucGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 130885 | 0.68 | 0.466279 |
Target: 5'- aGGCCgaaGCGG-GGacugaggCgGGGGGCGGCGg -3' miRNA: 3'- -CCGGa--CGCCaCCga-----GgCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 58310 | 0.68 | 0.466279 |
Target: 5'- uGGCgC-GCGGUGGCUCCGgcaccGGucucuGUGGCc -3' miRNA: 3'- -CCG-GaCGCCACCGAGGC-----UCu----CGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 59500 | 0.68 | 0.465378 |
Target: 5'- cGCCcGCGccuccGGCUCCGgcaucgccgucguGGGGCGGCAu -3' miRNA: 3'- cCGGaCGCca---CCGAGGC-------------UCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 102686 | 0.68 | 0.457311 |
Target: 5'- gGGCgggGCGGgggcagGGCgCCGGGcgGGCGGCGa -3' miRNA: 3'- -CCGga-CGCCa-----CCGaGGCUC--UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 4788 | 0.68 | 0.457311 |
Target: 5'- cGGCCgugggugcgUGCGGUGGC-CUGGGGGagacggGGUAg -3' miRNA: 3'- -CCGG---------ACGCCACCGaGGCUCUCg-----CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 53808 | 0.68 | 0.457311 |
Target: 5'- aGGUCUGCGcccccUGGCgcgCCG-GAGCGGgGg -3' miRNA: 3'- -CCGGACGCc----ACCGa--GGCuCUCGCCgU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 107601 | 0.68 | 0.457311 |
Target: 5'- cGGCCgugggugcgUGCGGUGGC-CUGGGGGagacggGGUAg -3' miRNA: 3'- -CCGG---------ACGCCACCGaGGCUCUCg-----CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 597 | 0.68 | 0.457311 |
Target: 5'- uGGCCcuccGCGGccGCUCCGc-AGCGGCGc -3' miRNA: 3'- -CCGGa---CGCCacCGAGGCucUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 14208 | 0.68 | 0.457311 |
Target: 5'- gGGCUgGCGGUcaGGCcggCCGGGGGCguggugagGGCAa -3' miRNA: 3'- -CCGGaCGCCA--CCGa--GGCUCUCG--------CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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