miRNA display CGI


Results 101 - 120 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 59263 0.66 0.570044
Target:  5'- gGGCCaUGauuUGGCUCuCGAGccccGGCGGCGg -3'
miRNA:   3'- -CCGG-ACgccACCGAG-GCUC----UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59439 0.68 0.466279
Target:  5'- cGGCCcGCGGcccgUGGC-CCGA--GCGGCu -3'
miRNA:   3'- -CCGGaCGCC----ACCGaGGCUcuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 59500 0.68 0.465378
Target:  5'- cGCCcGCGccuccGGCUCCGgcaucgccgucguGGGGCGGCAu -3'
miRNA:   3'- cCGGaCGCca---CCGAGGC-------------UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59545 0.67 0.484483
Target:  5'- uGGCagGCGGUgggGGCggCGGGGGCGGUg -3'
miRNA:   3'- -CCGgaCGCCA---CCGagGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 59840 0.66 0.550609
Target:  5'- cGCCUcGCGGggcaccggccaGGCgcggucgCCGAGGGcCGGCGc -3'
miRNA:   3'- cCGGA-CGCCa----------CCGa------GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59855 0.66 0.550609
Target:  5'- cGGCCagGCGc-GGUcgCCGAGGGcCGGCGc -3'
miRNA:   3'- -CCGGa-CGCcaCCGa-GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59886 0.71 0.313834
Target:  5'- cGGCCUccGCGuUGGCgagGAGGGCGGCGc -3'
miRNA:   3'- -CCGGA--CGCcACCGaggCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 61433 0.67 0.521861
Target:  5'- cGCCcGCGGccGCgccgCCGGGcGCGGCGa -3'
miRNA:   3'- cCGGaCGCCacCGa---GGCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 61979 0.71 0.300164
Target:  5'- cGGCgCgGCGGgcauaaugGGC-CCGaAGAGCGGCGc -3'
miRNA:   3'- -CCG-GaCGCCa-------CCGaGGC-UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 62924 0.7 0.373161
Target:  5'- gGGCCcGCGGgcGGCUCCucgucGGGgGGCAg -3'
miRNA:   3'- -CCGGaCGCCa-CCGAGGcu---CUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 66056 0.66 0.570044
Target:  5'- cGUCgGCGGcGGCgCCGGGGGCGacGCGg -3'
miRNA:   3'- cCGGaCGCCaCCGaGGCUCUCGC--CGU- -5'
6353 5' -62.7 NC_001847.1 + 66989 0.66 0.599487
Target:  5'- cGGgCUGCGGcgcGGCgCCGgAGAaGgGGCAg -3'
miRNA:   3'- -CCgGACGCCa--CCGaGGC-UCU-CgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 67615 0.7 0.327971
Target:  5'- cGCCUGCGGaaaaaGGCggcgCCGgcGGAGaCGGCGg -3'
miRNA:   3'- cCGGACGCCa----CCGa---GGC--UCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 67961 0.66 0.550609
Target:  5'- aGCC-GCGGcagggGGUcgccgCCGAGAGCGGgGg -3'
miRNA:   3'- cCGGaCGCCa----CCGa----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 68073 0.71 0.320844
Target:  5'- cGCCUGCGGcggGGCgaacgCCGcggcgcGAGCGGUg -3'
miRNA:   3'- cCGGACGCCa--CCGa----GGCu-----CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 69375 0.68 0.475338
Target:  5'- cGGUCUuugcgGCGGUGGCgCUGccGGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCACCGaGGCucUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 69431 0.66 0.589642
Target:  5'- cGGCUcagcgcgGCGGUGGCg--GAcGGCGGCGc -3'
miRNA:   3'- -CCGGa------CGCCACCGaggCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 69471 0.66 0.540968
Target:  5'- cGGCg-GCGG-GGCUccugcuggCCGGGcuGGCGGCGu -3'
miRNA:   3'- -CCGgaCGCCaCCGA--------GGCUC--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 71854 0.66 0.540968
Target:  5'- cGCCUccccaGCGGUGGaagcggCCGcGAGCGcGCGg -3'
miRNA:   3'- cCGGA-----CGCCACCga----GGCuCUCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 72696 0.68 0.466279
Target:  5'- aGGCCggggagaGCGGccGC-CCGGuGGGCGGCAg -3'
miRNA:   3'- -CCGGa------CGCCacCGaGGCU-CUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.