miRNA display CGI


Results 81 - 100 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 48488 0.71 0.293504
Target:  5'- gGGUCgagcGCGGcGcGCUCCG-GGGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCaC-CGAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 49043 0.7 0.332302
Target:  5'- aGCC-GUGGUGGCgcgcagcucacggCCGcGGGCGGCGg -3'
miRNA:   3'- cCGGaCGCCACCGa------------GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 49396 0.66 0.570044
Target:  5'- cGGCCUG-GGUGGCg-CGGGGcuGaCGGCc -3'
miRNA:   3'- -CCGGACgCCACCGagGCUCU--C-GCCGu -5'
6353 5' -62.7 NC_001847.1 + 51391 0.68 0.457311
Target:  5'- aGGCC-GCGGUcgcGGCgCCGAaccuuGCGGCGg -3'
miRNA:   3'- -CCGGaCGCCA---CCGaGGCUcu---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 51516 0.67 0.531383
Target:  5'- cGCCggUGCGGcgccGGCaggCGGGGGCGGCGc -3'
miRNA:   3'- cCGG--ACGCCa---CCGag-GCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 51570 0.7 0.345548
Target:  5'- gGGCUcGCGGgcgccuaccagaaGC-CCGAGAGCGGCGg -3'
miRNA:   3'- -CCGGaCGCCac-----------CGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 52156 0.67 0.503021
Target:  5'- aGGCC-GUGGccaGGCUCCGccGGAGCaGCc -3'
miRNA:   3'- -CCGGaCGCCa--CCGAGGC--UCUCGcCGu -5'
6353 5' -62.7 NC_001847.1 + 53606 0.68 0.475338
Target:  5'- gGGCCa-CGGUGGCgggCgGcGGGGUGGCAc -3'
miRNA:   3'- -CCGGacGCCACCGa--GgC-UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 53755 0.68 0.475338
Target:  5'- cGGauCCgGCGGcccgaGGCggCGAGGGCGGCAg -3'
miRNA:   3'- -CC--GGaCGCCa----CCGagGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 53808 0.68 0.457311
Target:  5'- aGGUCUGCGcccccUGGCgcgCCG-GAGCGGgGg -3'
miRNA:   3'- -CCGGACGCc----ACCGa--GGCuCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 53852 0.68 0.475338
Target:  5'- cGGCgCUgGCGGcgcUGGCggcgCCGAccgccgcggGGGCGGCGg -3'
miRNA:   3'- -CCG-GA-CGCC---ACCGa---GGCU---------CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 54252 0.81 0.063451
Target:  5'- aGCgCUGCGGUGGCgcCCGAcGAGCGGCu -3'
miRNA:   3'- cCG-GACGCCACCGa-GGCU-CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 54425 0.68 0.448436
Target:  5'- uGGCCUcgGCGGcccgGGCagagaCGAGGGgGGCGg -3'
miRNA:   3'- -CCGGA--CGCCa---CCGag---GCUCUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 54534 0.66 0.560303
Target:  5'- gGGCCgucCGGgGGCgcagacggCGGGGGCGGCGc -3'
miRNA:   3'- -CCGGac-GCCaCCGag------GCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 54578 0.66 0.540968
Target:  5'- cGGCCccGCGGgcugGGCggCGcuGGCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCa---CCGagGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 57929 0.7 0.373161
Target:  5'- gGGCCcgGCGGcccgcGGCUCCGucgcGGGCaGCAg -3'
miRNA:   3'- -CCGGa-CGCCa----CCGAGGCu---CUCGcCGU- -5'
6353 5' -62.7 NC_001847.1 + 57987 0.67 0.484483
Target:  5'- aGGaCCggcGCGGUGGCggCGcAG-GCGGCGg -3'
miRNA:   3'- -CC-GGa--CGCCACCGagGC-UCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 58201 0.67 0.506766
Target:  5'- cGGCCaGCaGGc-GCUCCGGGcggaucugcccgccgGGCGGCAg -3'
miRNA:   3'- -CCGGaCG-CCacCGAGGCUC---------------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 58310 0.68 0.466279
Target:  5'- uGGCgC-GCGGUGGCUCCGgcaccGGucucuGUGGCc -3'
miRNA:   3'- -CCG-GaCGCCACCGAGGC-----UCu----CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 58668 0.66 0.550609
Target:  5'- cGCUUGCGGcGGUUggGcGGGCGGCAg -3'
miRNA:   3'- cCGGACGCCaCCGAggCuCUCGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.