miRNA display CGI


Results 81 - 100 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 80822 0.66 0.579825
Target:  5'- aGGCCgcgcgccgcgacUGgGGgGGCagaUCCGGGcGGCGGCGc -3'
miRNA:   3'- -CCGG------------ACgCCaCCG---AGGCUC-UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 80274 0.67 0.483565
Target:  5'- gGGCCUccuucaugaaGCGGUgcgcgucaaagguGGCgUCCGAGGcGCGGUu -3'
miRNA:   3'- -CCGGA----------CGCCA-------------CCG-AGGCUCU-CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 79561 0.68 0.448436
Target:  5'- gGGCUcGCGGggGGCgCCGGGcucGCGGCc -3'
miRNA:   3'- -CCGGaCGCCa-CCGaGGCUCu--CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 79398 0.75 0.173627
Target:  5'- cGGCCgcgcggGCGcgagccggaccaccGUGGCgcCCGAGGGCGGCGg -3'
miRNA:   3'- -CCGGa-----CGC--------------CACCGa-GGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 77820 0.67 0.512405
Target:  5'- cGCUUGUGGUuggcggugcagGGCUCaCGAGcucGCGGCc -3'
miRNA:   3'- cCGGACGCCA-----------CCGAG-GCUCu--CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 76389 0.71 0.306941
Target:  5'- cGGCCU-CGGggggGGCgCCGGGGgccGCGGCGg -3'
miRNA:   3'- -CCGGAcGCCa---CCGaGGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 74126 0.71 0.31314
Target:  5'- cGGCCguggugcUGCGcGUGGCgCCGGGgcgaaugauGGCGGCGc -3'
miRNA:   3'- -CCGG-------ACGC-CACCGaGGCUC---------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 73498 0.67 0.521861
Target:  5'- cGGCC-GCGGUGGCggcgCUGcAGuccAGCgGGCGc -3'
miRNA:   3'- -CCGGaCGCCACCGa---GGC-UC---UCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 72895 0.67 0.521861
Target:  5'- gGGCagCUGCaGGUGGCgcgccaCGAGgcggucGGCGGCGu -3'
miRNA:   3'- -CCG--GACG-CCACCGag----GCUC------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 72696 0.68 0.466279
Target:  5'- aGGCCggggagaGCGGccGC-CCGGuGGGCGGCAg -3'
miRNA:   3'- -CCGGa------CGCCacCGaGGCU-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 71854 0.66 0.540968
Target:  5'- cGCCUccccaGCGGUGGaagcggCCGcGAGCGcGCGg -3'
miRNA:   3'- cCGGA-----CGCCACCga----GGCuCUCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 69471 0.66 0.540968
Target:  5'- cGGCg-GCGG-GGCUccugcuggCCGGGcuGGCGGCGu -3'
miRNA:   3'- -CCGgaCGCCaCCGA--------GGCUC--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 69431 0.66 0.589642
Target:  5'- cGGCUcagcgcgGCGGUGGCg--GAcGGCGGCGc -3'
miRNA:   3'- -CCGGa------CGCCACCGaggCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 69375 0.68 0.475338
Target:  5'- cGGUCUuugcgGCGGUGGCgCUGccGGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCACCGaGGCucUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 68073 0.71 0.320844
Target:  5'- cGCCUGCGGcggGGCgaacgCCGcggcgcGAGCGGUg -3'
miRNA:   3'- cCGGACGCCa--CCGa----GGCu-----CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 67961 0.66 0.550609
Target:  5'- aGCC-GCGGcagggGGUcgccgCCGAGAGCGGgGg -3'
miRNA:   3'- cCGGaCGCCa----CCGa----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 67615 0.7 0.327971
Target:  5'- cGCCUGCGGaaaaaGGCggcgCCGgcGGAGaCGGCGg -3'
miRNA:   3'- cCGGACGCCa----CCGa---GGC--UCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 66989 0.66 0.599487
Target:  5'- cGGgCUGCGGcgcGGCgCCGgAGAaGgGGCAg -3'
miRNA:   3'- -CCgGACGCCa--CCGaGGC-UCU-CgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 66056 0.66 0.570044
Target:  5'- cGUCgGCGGcGGCgCCGGGGGCGacGCGg -3'
miRNA:   3'- cCGGaCGCCaCCGaGGCUCUCGC--CGU- -5'
6353 5' -62.7 NC_001847.1 + 62924 0.7 0.373161
Target:  5'- gGGCCcGCGGgcGGCUCCucgucGGGgGGCAg -3'
miRNA:   3'- -CCGGaCGCCa-CCGAGGcu---CUCgCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.