miRNA display CGI


Results 81 - 100 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 29481 0.67 0.531383
Target:  5'- cGGCCgagGCGGcacgcuCUCCGGccgcGGGCGGCGc -3'
miRNA:   3'- -CCGGa--CGCCacc---GAGGCU----CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 24325 0.67 0.531383
Target:  5'- aGCgaGCGGUGGCgcgccacgCCGcGcGCGGCc -3'
miRNA:   3'- cCGgaCGCCACCGa-------GGCuCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 30060 0.67 0.521861
Target:  5'- uGCCggcGCGGUGGCgcggCUGGGAGU-GCu -3'
miRNA:   3'- cCGGa--CGCCACCGa---GGCUCUCGcCGu -5'
6353 5' -62.7 NC_001847.1 + 84237 0.67 0.531383
Target:  5'- gGGCCgccGCGGgGGag--GAGGGCGGCGa -3'
miRNA:   3'- -CCGGa--CGCCaCCgaggCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59545 0.67 0.484483
Target:  5'- uGGCagGCGGUgggGGCggCGGGGGCGGUg -3'
miRNA:   3'- -CCGgaCGCCA---CCGagGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 125308 0.67 0.484483
Target:  5'- aGGCUgGCcGUGGCUCaUGGcGGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 132174 0.67 0.484483
Target:  5'- cGGCCccgGCGGcgcUGcGCgCCGAG-GCGGCc -3'
miRNA:   3'- -CCGGa--CGCC---AC-CGaGGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 102645 0.67 0.493712
Target:  5'- cGUCUcGgGGUGacGCgCCGGGAGCGGCc -3'
miRNA:   3'- cCGGA-CgCCAC--CGaGGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 6681 0.67 0.493712
Target:  5'- aGGCC-GCGGcGGCcggCCGGGcGCGcGCGc -3'
miRNA:   3'- -CCGGaCGCCaCCGa--GGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 106813 0.67 0.484483
Target:  5'- cGGCCccGCGG-GGCgCCGGGccCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCaCCGaGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 105100 0.67 0.493712
Target:  5'- cGCCgucgGCGGcGGggCCGccGGGCGGCAu -3'
miRNA:   3'- cCGGa---CGCCaCCgaGGCu-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 4321 0.67 0.493712
Target:  5'- cGCCUGCGGguaGuGCUCCGccauguAGGGCGcCAg -3'
miRNA:   3'- cCGGACGCCa--C-CGAGGC------UCUCGCcGU- -5'
6353 5' -62.7 NC_001847.1 + 4534 0.67 0.503021
Target:  5'- uGCCUcGCGGcGGCcgcCCGcGGGUGGCGc -3'
miRNA:   3'- cCGGA-CGCCaCCGa--GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 90409 0.67 0.531383
Target:  5'- uGCUUGUGGcgGGC-CaCGAG-GCGGCGc -3'
miRNA:   3'- cCGGACGCCa-CCGaG-GCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 129322 0.67 0.512405
Target:  5'- gGGCCUGcCGGgcgcGGggCCGGGGGCguucGGCc -3'
miRNA:   3'- -CCGGAC-GCCa---CCgaGGCUCUCG----CCGu -5'
6353 5' -62.7 NC_001847.1 + 101406 0.67 0.516179
Target:  5'- cGGCaaucgGgGGUcucgucucccgccgcGGCUCCGAGAGCuggggGGCGc -3'
miRNA:   3'- -CCGga---CgCCA---------------CCGAGGCUCUCG-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 7230 0.67 0.503021
Target:  5'- uGGCgCUGCagcggcuggucgGGUGGCUgugCGGGcGCGGCGg -3'
miRNA:   3'- -CCG-GACG------------CCACCGAg--GCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 82961 0.67 0.503021
Target:  5'- aGGCCgccugcgaucUGUGGUGGCugcUCCGgcGGAGCcuGGCc -3'
miRNA:   3'- -CCGG----------ACGCCACCG---AGGC--UCUCG--CCGu -5'
6353 5' -62.7 NC_001847.1 + 14208 0.68 0.457311
Target:  5'- gGGCUgGCGGUcaGGCcggCCGGGGGCguggugagGGCAa -3'
miRNA:   3'- -CCGGaCGCCA--CCGa--GGCUCUCG--------CCGU- -5'
6353 5' -62.7 NC_001847.1 + 4788 0.68 0.457311
Target:  5'- cGGCCgugggugcgUGCGGUGGC-CUGGGGGagacggGGUAg -3'
miRNA:   3'- -CCGG---------ACGCCACCGaGGCUCUCg-----CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.