miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 31919 0.67 0.521861
Target:  5'- cGGCC-GCGGccgcGGCUCCGc-GGCGGg- -3'
miRNA:   3'- -CCGGaCGCCa---CCGAGGCucUCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 82440 0.67 0.503021
Target:  5'- aGGUCgggGCGcuUGGCUCCaGGcGCGGCGg -3'
miRNA:   3'- -CCGGa--CGCc-ACCGAGGcUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 101406 0.67 0.516179
Target:  5'- cGGCaaucgGgGGUcucgucucccgccgcGGCUCCGAGAGCuggggGGCGc -3'
miRNA:   3'- -CCGga---CgCCA---------------CCGAGGCUCUCG-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 120774 0.67 0.521861
Target:  5'- cGGCCgcgGCcGUGGCaUCUGcGAGCgucGGCAg -3'
miRNA:   3'- -CCGGa--CGcCACCG-AGGCuCUCG---CCGU- -5'
6353 5' -62.7 NC_001847.1 + 73498 0.67 0.521861
Target:  5'- cGGCC-GCGGUGGCggcgCUGcAGuccAGCgGGCGc -3'
miRNA:   3'- -CCGGaCGCCACCGa---GGC-UC---UCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 103139 0.67 0.530428
Target:  5'- gGGCCgccgGCGcgcgaagguccucGcGGCU-CGAGGGCGGCGu -3'
miRNA:   3'- -CCGGa---CGC-------------CaCCGAgGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46333 0.67 0.531383
Target:  5'- cGGCCgcccGCGG-GGC-CgCGucGGCGGCAu -3'
miRNA:   3'- -CCGGa---CGCCaCCGaG-GCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 51516 0.67 0.531383
Target:  5'- cGCCggUGCGGcgccGGCaggCGGGGGCGGCGc -3'
miRNA:   3'- cCGG--ACGCCa---CCGag-GCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 133284 0.67 0.503021
Target:  5'- aGCCgcGCGGUGcGCUCCGgcgcAGAGUGcGUg -3'
miRNA:   3'- cCGGa-CGCCAC-CGAGGC----UCUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 84751 0.67 0.503021
Target:  5'- uGGUagaaGCGGUGGaagCCGGcGGCGGCGc -3'
miRNA:   3'- -CCGga--CGCCACCga-GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 52156 0.67 0.503021
Target:  5'- aGGCC-GUGGccaGGCUCCGccGGAGCaGCc -3'
miRNA:   3'- -CCGGaCGCCa--CCGAGGC--UCUCGcCGu -5'
6353 5' -62.7 NC_001847.1 + 2287 0.67 0.493712
Target:  5'- cGCCgucgGCGGcGGggCCGccGGGCGGCAu -3'
miRNA:   3'- cCGGa---CGCCaCCgaGGCu-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34075 0.67 0.484483
Target:  5'- cGGCCcccGCGGcGGCcCCGGGGcCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGaGGCUCUcGCCGu -5'
6353 5' -62.7 NC_001847.1 + 29361 0.67 0.484483
Target:  5'- cGGCCccgGCGGcgcUGcGCgCCGAG-GCGGCc -3'
miRNA:   3'- -CCGGa--CGCC---AC-CGaGGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 4000 0.67 0.484483
Target:  5'- cGGCCccGCGG-GGCgCCGGGccCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCaCCGaGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 57987 0.67 0.484483
Target:  5'- aGGaCCggcGCGGUGGCggCGcAG-GCGGCGg -3'
miRNA:   3'- -CC-GGa--CGCCACCGagGC-UCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 35967 0.67 0.484483
Target:  5'- cGGCgCUGCuGUGGCUCcCGccGGCuGGCGc -3'
miRNA:   3'- -CCG-GACGcCACCGAG-GCucUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 22495 0.67 0.484483
Target:  5'- aGGCUgGCcGUGGCUCaUGGcGGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 80274 0.67 0.483565
Target:  5'- gGGCCUccuucaugaaGCGGUgcgcgucaaagguGGCgUCCGAGGcGCGGUu -3'
miRNA:   3'- -CCGGA----------CGCCA-------------CCG-AGGCUCU-CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 90409 0.67 0.531383
Target:  5'- uGCUUGUGGcgGGC-CaCGAG-GCGGCGc -3'
miRNA:   3'- cCGGACGCCa-CCGaG-GCUCuCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.