miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 99799 0.69 0.397289
Target:  5'- cGCCUGUGGUgcGGggUCG-GAGCGGCc -3'
miRNA:   3'- cCGGACGCCA--CCgaGGCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 32673 0.69 0.404721
Target:  5'- uGGCCUGCauccgccGGUGGCU---GGAGgGGCGc -3'
miRNA:   3'- -CCGGACG-------CCACCGAggcUCUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 130804 0.69 0.405552
Target:  5'- cGGCCgggGCGGaGGCggccgcggCCGA-AGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCUcUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 27518 0.69 0.405552
Target:  5'- cGCCgcgGCGGcGGCggggacgcCCGAGAacgGCGGCGc -3'
miRNA:   3'- cCGGa--CGCCaCCGa-------GGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 33342 0.69 0.405552
Target:  5'- cGGCCUG-GGUGGCgcugcugCaCGAGGcGCaGGCGg -3'
miRNA:   3'- -CCGGACgCCACCGa------G-GCUCU-CG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 27991 0.69 0.405552
Target:  5'- cGGCCgggGCGGaGGCggccgcggCCGA-AGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCUcUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 42090 0.69 0.4114
Target:  5'- cGGCCUcGCGGUgccggcaccguccaGGCgCCGGGGGCcGCu -3'
miRNA:   3'- -CCGGA-CGCCA--------------CCGaGGCUCUCGcCGu -5'
6353 5' -62.7 NC_001847.1 + 118101 0.69 0.413922
Target:  5'- cGCCcgagcUGCGcGUGuaCUUCGAGGGCGGCGa -3'
miRNA:   3'- cCGG-----ACGC-CACc-GAGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96405 0.69 0.413922
Target:  5'- gGGCCgGCGGcGGCaauggCgGGGccGGCGGCAg -3'
miRNA:   3'- -CCGGaCGCCaCCGa----GgCUC--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34094 0.69 0.422397
Target:  5'- cGGCC-GCcGUGGCUCgCGc-GGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 120173 0.69 0.422397
Target:  5'- uGCCUGUugcucuggauGGUGGUgcuggCCGcgcGAGCGGCGc -3'
miRNA:   3'- cCGGACG----------CCACCGa----GGCu--CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 43430 0.68 0.430976
Target:  5'- gGGCCUcgcgucgcGCGGU-GC-CCGAGAGCGaaGCGg -3'
miRNA:   3'- -CCGGA--------CGCCAcCGaGGCUCUCGC--CGU- -5'
6353 5' -62.7 NC_001847.1 + 35537 0.68 0.430976
Target:  5'- cGGCgagGUcGUGGCUgCCGAG-GCGGCGc -3'
miRNA:   3'- -CCGga-CGcCACCGA-GGCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 89302 0.68 0.434436
Target:  5'- aGGCCUcggccgugccgcccaGCGaGUGGC-CCG--GGCGGCAg -3'
miRNA:   3'- -CCGGA---------------CGC-CACCGaGGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 103232 0.68 0.439657
Target:  5'- gGGCCcgggGCGGgcgGGCggCGGcGGCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCa--CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 419 0.68 0.439657
Target:  5'- gGGCCcgggGCGGgcgGGCggCGGcGGCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCa--CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 90736 0.68 0.439657
Target:  5'- aGCCgcucgcgGCGcGUGGCcgggccCCGGGAGCGGgAg -3'
miRNA:   3'- cCGGa------CGC-CACCGa-----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 116423 0.68 0.439657
Target:  5'- gGGCCgcGCGcuugGGCU-CGAGGGCGGUg -3'
miRNA:   3'- -CCGGa-CGCca--CCGAgGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 5366 0.68 0.439657
Target:  5'- cGGCCggGCccaGGCUCCGGcgguccGAGCGGCc -3'
miRNA:   3'- -CCGGa-CGccaCCGAGGCU------CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 79561 0.68 0.448436
Target:  5'- gGGCUcGCGGggGGCgCCGGGcucGCGGCc -3'
miRNA:   3'- -CCGGaCGCCa-CCGaGGCUCu--CGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.