miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 103139 0.67 0.530428
Target:  5'- gGGCCgccgGCGcgcgaagguccucGcGGCU-CGAGGGCGGCGu -3'
miRNA:   3'- -CCGGa---CGC-------------CaCCGAgGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 61433 0.67 0.521861
Target:  5'- cGCCcGCGGccGCgccgCCGGGcGCGGCGa -3'
miRNA:   3'- cCGGaCGCCacCGa---GGCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 120774 0.67 0.521861
Target:  5'- cGGCCgcgGCcGUGGCaUCUGcGAGCgucGGCAg -3'
miRNA:   3'- -CCGGa--CGcCACCG-AGGCuCUCG---CCGU- -5'
6353 5' -62.7 NC_001847.1 + 73498 0.67 0.521861
Target:  5'- cGGCC-GCGGUGGCggcgCUGcAGuccAGCgGGCGc -3'
miRNA:   3'- -CCGGaCGCCACCGa---GGC-UC---UCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 72895 0.67 0.521861
Target:  5'- gGGCagCUGCaGGUGGCgcgccaCGAGgcggucGGCGGCGu -3'
miRNA:   3'- -CCG--GACG-CCACCGag----GCUC------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 31919 0.67 0.521861
Target:  5'- cGGCC-GCGGccgcGGCUCCGc-GGCGGg- -3'
miRNA:   3'- -CCGGaCGCCa---CCGAGGCucUCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 30060 0.67 0.521861
Target:  5'- uGCCggcGCGGUGGCgcggCUGGGAGU-GCu -3'
miRNA:   3'- cCGGa--CGCCACCGa---GGCUCUCGcCGu -5'
6353 5' -62.7 NC_001847.1 + 101406 0.67 0.516179
Target:  5'- cGGCaaucgGgGGUcucgucucccgccgcGGCUCCGAGAGCuggggGGCGc -3'
miRNA:   3'- -CCGga---CgCCA---------------CCGAGGCUCUCG-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 129322 0.67 0.512405
Target:  5'- gGGCCUGcCGGgcgcGGggCCGGGGGCguucGGCc -3'
miRNA:   3'- -CCGGAC-GCCa---CCgaGGCUCUCG----CCGu -5'
6353 5' -62.7 NC_001847.1 + 77820 0.67 0.512405
Target:  5'- cGCUUGUGGUuggcggugcagGGCUCaCGAGcucGCGGCc -3'
miRNA:   3'- cCGGACGCCA-----------CCGAG-GCUCu--CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 134192 0.67 0.512405
Target:  5'- cGGCgCaGCGuGgagcGGCgcgcgcgggCCGAGGGCGGCGg -3'
miRNA:   3'- -CCG-GaCGC-Ca---CCGa--------GGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 26509 0.67 0.512405
Target:  5'- gGGCCUGcCGGgcgcGGggCCGGGGGCguucGGCc -3'
miRNA:   3'- -CCGGAC-GCCa---CCgaGGCUCUCG----CCGu -5'
6353 5' -62.7 NC_001847.1 + 33203 0.67 0.512405
Target:  5'- cGGCCaUGaCGGacuacgugaUGGCgaugcuggCCGAGuGCGGCu -3'
miRNA:   3'- -CCGG-AC-GCC---------ACCGa-------GGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 131483 0.67 0.508643
Target:  5'- cGGCCUGCuGGcaUGGCUgcuguacgucgcguUCGuguaccugcgccaGGAGCGGCGc -3'
miRNA:   3'- -CCGGACG-CC--ACCGA--------------GGC-------------UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 58201 0.67 0.506766
Target:  5'- cGGCCaGCaGGc-GCUCCGGGcggaucugcccgccgGGCGGCAg -3'
miRNA:   3'- -CCGGaCG-CCacCGAGGCUC---------------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 82440 0.67 0.503021
Target:  5'- aGGUCgggGCGcuUGGCUCCaGGcGCGGCGg -3'
miRNA:   3'- -CCGGa--CGCc-ACCGAGGcUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 133284 0.67 0.503021
Target:  5'- aGCCgcGCGGUGcGCUCCGgcgcAGAGUGcGUg -3'
miRNA:   3'- cCGGa-CGCCAC-CGAGGC----UCUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 7230 0.67 0.503021
Target:  5'- uGGCgCUGCagcggcuggucgGGUGGCUgugCGGGcGCGGCGg -3'
miRNA:   3'- -CCG-GACG------------CCACCGAg--GCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 84751 0.67 0.503021
Target:  5'- uGGUagaaGCGGUGGaagCCGGcGGCGGCGc -3'
miRNA:   3'- -CCGga--CGCCACCga-GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 52156 0.67 0.503021
Target:  5'- aGGCC-GUGGccaGGCUCCGccGGAGCaGCc -3'
miRNA:   3'- -CCGGaCGCCa--CCGAGGC--UCUCGcCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.