miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 95666 0.66 0.551576
Target:  5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 67961 0.66 0.550609
Target:  5'- aGCC-GCGGcagggGGUcgccgCCGAGAGCGGgGg -3'
miRNA:   3'- cCGGaCGCCa----CCGa----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 98839 0.66 0.550609
Target:  5'- cGGCg-GCGGUGGCagCGGcgcgcgaacuucGuGCGGCAa -3'
miRNA:   3'- -CCGgaCGCCACCGagGCU------------CuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 107853 0.66 0.550609
Target:  5'- gGGCgaccgGCGGcGGCUCCGAcGGGacggaCGGCGg -3'
miRNA:   3'- -CCGga---CGCCaCCGAGGCU-CUC-----GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59840 0.66 0.550609
Target:  5'- cGCCUcGCGGggcaccggccaGGCgcggucgCCGAGGGcCGGCGc -3'
miRNA:   3'- cCGGA-CGCCa----------CCGa------GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 58668 0.66 0.550609
Target:  5'- cGCUUGCGGcGGUUggGcGGGCGGCAg -3'
miRNA:   3'- cCGGACGCCaCCGAggCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 5040 0.66 0.550609
Target:  5'- gGGCgaccgGCGGcGGCUCCGAcGGGacggaCGGCGg -3'
miRNA:   3'- -CCGga---CGCCaCCGAGGCU-CUC-----GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 26992 0.66 0.550609
Target:  5'- cGUCUGCGGcGGCgcgguugCCGuacucGGCGGCGc -3'
miRNA:   3'- cCGGACGCCaCCGa------GGCuc---UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59855 0.66 0.550609
Target:  5'- cGGCCagGCGc-GGUcgCCGAGGGcCGGCGc -3'
miRNA:   3'- -CCGGa-CGCcaCCGa-GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 69471 0.66 0.540968
Target:  5'- cGGCg-GCGG-GGCUccugcuggCCGGGcuGGCGGCGu -3'
miRNA:   3'- -CCGgaCGCCaCCGA--------GGCUC--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 3944 0.66 0.540968
Target:  5'- cGCCgcgGCGGggggGGCgCCGucuccGGCGGCGa -3'
miRNA:   3'- cCGGa--CGCCa---CCGaGGCuc---UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 71854 0.66 0.540968
Target:  5'- cGCCUccccaGCGGUGGaagcggCCGcGAGCGcGCGg -3'
miRNA:   3'- cCGGA-----CGCCACCga----GGCuCUCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 54578 0.66 0.540968
Target:  5'- cGGCCccGCGGgcugGGCggCGcuGGCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCa---CCGagGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95630 0.66 0.540006
Target:  5'- cGCUgugGCGGgccgcucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- cCGGa--CGCC-------ACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 90409 0.67 0.531383
Target:  5'- uGCUUGUGGcgGGC-CaCGAG-GCGGCGc -3'
miRNA:   3'- cCGGACGCCa-CCGaG-GCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 51516 0.67 0.531383
Target:  5'- cGCCggUGCGGcgccGGCaggCGGGGGCGGCGc -3'
miRNA:   3'- cCGG--ACGCCa---CCGag-GCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46333 0.67 0.531383
Target:  5'- cGGCCgcccGCGG-GGC-CgCGucGGCGGCAu -3'
miRNA:   3'- -CCGGa---CGCCaCCGaG-GCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 29481 0.67 0.531383
Target:  5'- cGGCCgagGCGGcacgcuCUCCGGccgcGGGCGGCGc -3'
miRNA:   3'- -CCGGa--CGCCacc---GAGGCU----CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 84237 0.67 0.531383
Target:  5'- gGGCCgccGCGGgGGag--GAGGGCGGCGa -3'
miRNA:   3'- -CCGGa--CGCCaCCgaggCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 24325 0.67 0.531383
Target:  5'- aGCgaGCGGUGGCgcgccacgCCGcGcGCGGCc -3'
miRNA:   3'- cCGgaCGCCACCGa-------GGCuCuCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.