miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 95774 0.66 0.579825
Target:  5'- gGGCC-GCucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGaCGccACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 29223 0.66 0.579825
Target:  5'- cGGCCgcgGCGGgccgcGGCcugCCGGccGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCa----CCGa--GGCUcuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 2243 0.66 0.579825
Target:  5'- gGGCgCggGCGuGUGGUagUCCccGGGCGGCAc -3'
miRNA:   3'- -CCG-Ga-CGC-CACCG--AGGcuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96460 0.66 0.579825
Target:  5'- aGGCgCUGCGGagaccaGGCU-UGcGGGCGGCGg -3'
miRNA:   3'- -CCG-GACGCCa-----CCGAgGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96825 0.66 0.573952
Target:  5'- -aCgUGCGGUaauugggggggaaagGGCgcgUCGGGGGCGGCGg -3'
miRNA:   3'- ccGgACGCCA---------------CCGa--GGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46911 0.66 0.57102
Target:  5'- aGGCUUcGgGGggcgcgucgggcccgGGCUCCGGGccgcguGCGGCGa -3'
miRNA:   3'- -CCGGA-CgCCa--------------CCGAGGCUCu-----CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 126231 0.66 0.570044
Target:  5'- gGGUCgucgGCGG-GGCgUCCGGGGucGuCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCaCCG-AGGCUCU--C-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 49396 0.66 0.570044
Target:  5'- cGGCCUG-GGUGGCg-CGGGGcuGaCGGCc -3'
miRNA:   3'- -CCGGACgCCACCGagGCUCU--C-GCCGu -5'
6353 5' -62.7 NC_001847.1 + 59263 0.66 0.570044
Target:  5'- gGGCCaUGauuUGGCUCuCGAGccccGGCGGCGg -3'
miRNA:   3'- -CCGG-ACgccACCGAG-GCUC----UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32782 0.66 0.570044
Target:  5'- -cCCUGUGGggGGagggCCGGGGGCGGaCGg -3'
miRNA:   3'- ccGGACGCCa-CCga--GGCUCUCGCC-GU- -5'
6353 5' -62.7 NC_001847.1 + 66056 0.66 0.570044
Target:  5'- cGUCgGCGGcGGCgCCGGGGGCGacGCGg -3'
miRNA:   3'- cCGGaCGCCaCCGaGGCUCUCGC--CGU- -5'
6353 5' -62.7 NC_001847.1 + 23418 0.66 0.570044
Target:  5'- gGGUCgucgGCGG-GGCgUCCGGGGucGuCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCaCCG-AGGCUCU--C-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 104534 0.66 0.569068
Target:  5'- cGGCgCUgcGCGGcGGCcCCGGGGccgcuacGCGGCGg -3'
miRNA:   3'- -CCG-GA--CGCCaCCGaGGCUCU-------CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 54534 0.66 0.560303
Target:  5'- gGGCCgucCGGgGGCgcagacggCGGGGGCGGCGc -3'
miRNA:   3'- -CCGGac-GCCaCCGag------GCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34129 0.66 0.560303
Target:  5'- cGGCCgcgGCGGcGGCaguaacugCCGccgcGGCGGCAc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCuc--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46201 0.66 0.560303
Target:  5'- cGGCCgGCGGcGGCcgCCGccGGGcCGGCc -3'
miRNA:   3'- -CCGGaCGCCaCCGa-GGCu-CUC-GCCGu -5'
6353 5' -62.7 NC_001847.1 + 87866 0.66 0.560303
Target:  5'- gGGCCUGUGGUcGCUgUGGccGcGCGGCu -3'
miRNA:   3'- -CCGGACGCCAcCGAgGCU--CuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 34649 0.66 0.560303
Target:  5'- aGGCCgaGCGGc-GCgCCGAGggGGCGGCc -3'
miRNA:   3'- -CCGGa-CGCCacCGaGGCUC--UCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 98782 0.66 0.559331
Target:  5'- gGGCCgcgGCGGcgccgcgUGGCgcgCCGcGGcgcGCGGCAc -3'
miRNA:   3'- -CCGGa--CGCC-------ACCGa--GGCuCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95666 0.66 0.551576
Target:  5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.