miRNA display CGI


Results 21 - 40 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 54252 0.81 0.063451
Target:  5'- aGCgCUGCGGUGGCgcCCGAcGAGCGGCu -3'
miRNA:   3'- cCG-GACGCCACCGa-GGCU-CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 130804 0.69 0.405552
Target:  5'- cGGCCgggGCGGaGGCggccgcggCCGA-AGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCUcUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 99799 0.69 0.397289
Target:  5'- cGCCUGUGGUgcGGggUCG-GAGCGGCc -3'
miRNA:   3'- cCGGACGCCA--CCgaGGCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 133966 0.7 0.335214
Target:  5'- cGGCCgcgGCGGUGGCcuUCUGc--GCGGCc -3'
miRNA:   3'- -CCGGa--CGCCACCG--AGGCucuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 74126 0.71 0.31314
Target:  5'- cGGCCguggugcUGCGcGUGGCgCCGGGgcgaaugauGGCGGCGc -3'
miRNA:   3'- -CCGG-------ACGC-CACCGaGGCUC---------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 103232 0.68 0.439657
Target:  5'- gGGCCcgggGCGGgcgGGCggCGGcGGCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCa--CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 33342 0.69 0.405552
Target:  5'- cGGCCUG-GGUGGCgcugcugCaCGAGGcGCaGGCGg -3'
miRNA:   3'- -CCGGACgCCACCGa------G-GCUCU-CG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 11660 0.72 0.28053
Target:  5'- cGCUUGCGGcGGCcccagCCGAGcccGCGGCGg -3'
miRNA:   3'- cCGGACGCCaCCGa----GGCUCu--CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 36983 0.7 0.365342
Target:  5'- cGGCgaGCGGgcccGCgCCGAGcGGCGGCGg -3'
miRNA:   3'- -CCGgaCGCCac--CGaGGCUC-UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 123794 0.7 0.350047
Target:  5'- gGGCCUGCGc-GGCggCGGcAGCGGCAg -3'
miRNA:   3'- -CCGGACGCcaCCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34457 0.72 0.261929
Target:  5'- aGGCC-GCGGUGGCcgCCG---GCGGCGa -3'
miRNA:   3'- -CCGGaCGCCACCGa-GGCucuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 24407 0.72 0.261929
Target:  5'- cGGCC-GUGGcGGCcgCCGuggacAGAGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCaCCGa-GGC-----UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 9898 0.68 0.448436
Target:  5'- aGGCCgucGCGcucGUGGCcgCCGAGuacgcccggcaGGCGGCu -3'
miRNA:   3'- -CCGGa--CGC---CACCGa-GGCUC-----------UCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 5366 0.68 0.439657
Target:  5'- cGGCCggGCccaGGCUCCGGcgguccGAGCGGCc -3'
miRNA:   3'- -CCGGa-CGccaCCGAGGCU------CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 34130 0.69 0.397289
Target:  5'- cGCCUgccGCGGUGGCcgCCGcggcGAGCGcGCu -3'
miRNA:   3'- cCGGA---CGCCACCGa-GGCu---CUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 19802 0.71 0.320844
Target:  5'- cGGCggagGCGGUGGCggUGgcGGGGCGGCAg -3'
miRNA:   3'- -CCGga--CGCCACCGagGC--UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59886 0.71 0.313834
Target:  5'- cGGCCUccGCGuUGGCgagGAGGGCGGCGc -3'
miRNA:   3'- -CCGGA--CGCcACCGaggCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 11324 0.72 0.250095
Target:  5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3'
miRNA:   3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 51570 0.7 0.345548
Target:  5'- gGGCUcGCGGgcgccuaccagaaGC-CCGAGAGCGGCGg -3'
miRNA:   3'- -CCGGaCGCCac-----------CGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 124761 0.7 0.365342
Target:  5'- cGGCUcGCGGgcGGCaCCGGGGGgGGCu -3'
miRNA:   3'- -CCGGaCGCCa-CCGaGGCUCUCgCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.