miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 123794 0.7 0.350047
Target:  5'- gGGCCUGCGc-GGCggCGGcAGCGGCAg -3'
miRNA:   3'- -CCGGACGCcaCCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34394 0.7 0.335214
Target:  5'- cGGCCgccgccGCGGcagacgcGGCgCUGGGGGCGGCGg -3'
miRNA:   3'- -CCGGa-----CGCCa------CCGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96918 0.71 0.305577
Target:  5'- cGGCCgcguagaggcgcGCGGcccgGGcCUCCGcGGGCGGCAg -3'
miRNA:   3'- -CCGGa-----------CGCCa---CC-GAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 103790 0.73 0.238147
Target:  5'- cGGCCgGCGG-GGCUuccgccgCCGGcGGCGGCAc -3'
miRNA:   3'- -CCGGaCGCCaCCGA-------GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34094 0.69 0.422397
Target:  5'- cGGCC-GCcGUGGCUCgCGc-GGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 111286 0.69 0.381092
Target:  5'- gGGCCgGgGGcGGCgcucggCCGGGGGCGGg- -3'
miRNA:   3'- -CCGGaCgCCaCCGa-----GGCUCUCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 49043 0.7 0.332302
Target:  5'- aGCC-GUGGUGGCgcgcagcucacggCCGcGGGCGGCGg -3'
miRNA:   3'- cCGGaCGCCACCGa------------GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32836 0.74 0.207122
Target:  5'- aGGCCcGC-GUGGCcgCCGAGAccGCGGCGc -3'
miRNA:   3'- -CCGGaCGcCACCGa-GGCUCU--CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 31145 0.7 0.373161
Target:  5'- -uUCUGCGGcUGGcCUUCGcGGGCGGCGu -3'
miRNA:   3'- ccGGACGCC-ACC-GAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 88886 0.74 0.197425
Target:  5'- cGGCg-GCGGcGGCUcccgCCGGGGGCGGCu -3'
miRNA:   3'- -CCGgaCGCCaCCGA----GGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 37583 0.7 0.335214
Target:  5'- uGGCCgcUGCGGcugcGGCggCCGGGGGcCGGCc -3'
miRNA:   3'- -CCGG--ACGCCa---CCGa-GGCUCUC-GCCGu -5'
6353 5' -62.7 NC_001847.1 + 85185 0.7 0.350047
Target:  5'- cGGCCUGCGcGUacucGGCgCCGGGcAGCccGGCGg -3'
miRNA:   3'- -CCGGACGC-CA----CCGaGGCUC-UCG--CCGU- -5'
6353 5' -62.7 NC_001847.1 + 85782 0.71 0.313834
Target:  5'- cGGCCgaUGCGGUGcGCgUCGAGGGUgcgGGCGc -3'
miRNA:   3'- -CCGG--ACGCCAC-CGaGGCUCUCG---CCGU- -5'
6353 5' -62.7 NC_001847.1 + 76389 0.71 0.306941
Target:  5'- cGGCCU-CGGggggGGCgCCGGGGgccGCGGCGg -3'
miRNA:   3'- -CCGGAcGCCa---CCGaGGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 133921 0.72 0.261929
Target:  5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3'
miRNA:   3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 11324 0.72 0.250095
Target:  5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3'
miRNA:   3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 12470 0.68 0.448436
Target:  5'- aGCCUccGCGGcuucccgcgUGGCggCGGGGGCGGCc -3'
miRNA:   3'- cCGGA--CGCC---------ACCGagGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 35537 0.68 0.430976
Target:  5'- cGGCgagGUcGUGGCUgCCGAG-GCGGCGc -3'
miRNA:   3'- -CCGga-CGcCACCGA-GGCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 27518 0.69 0.405552
Target:  5'- cGCCgcgGCGGcGGCggggacgcCCGAGAacgGCGGCGc -3'
miRNA:   3'- cCGGa--CGCCaCCGa-------GGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34130 0.69 0.397289
Target:  5'- cGCCUgccGCGGUGGCcgCCGcggcGAGCGcGCu -3'
miRNA:   3'- cCGGA---CGCCACCGa-GGCu---CUCGC-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.