miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 34457 0.72 0.261929
Target:  5'- aGGCC-GCGGUGGCcgCCG---GCGGCGa -3'
miRNA:   3'- -CCGGaCGCCACCGa-GGCucuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 9898 0.68 0.448436
Target:  5'- aGGCCgucGCGcucGUGGCcgCCGAGuacgcccggcaGGCGGCu -3'
miRNA:   3'- -CCGGa--CGC---CACCGa-GGCUC-----------UCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 59545 0.67 0.484483
Target:  5'- uGGCagGCGGUgggGGCggCGGGGGCGGUg -3'
miRNA:   3'- -CCGgaCGCCA---CCGagGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 69375 0.68 0.475338
Target:  5'- cGGUCUuugcgGCGGUGGCgCUGccGGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCACCGaGGCucUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 5366 0.68 0.439657
Target:  5'- cGGCCggGCccaGGCUCCGGcgguccGAGCGGCc -3'
miRNA:   3'- -CCGGa-CGccaCCGAGGCU------CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 19802 0.71 0.320844
Target:  5'- cGGCggagGCGGUGGCggUGgcGGGGCGGCAg -3'
miRNA:   3'- -CCGga--CGCCACCGagGC--UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 24407 0.72 0.261929
Target:  5'- cGGCC-GUGGcGGCcgCCGuggacAGAGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCaCCGa-GGC-----UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 11324 0.72 0.250095
Target:  5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3'
miRNA:   3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 51570 0.7 0.345548
Target:  5'- gGGCUcGCGGgcgccuaccagaaGC-CCGAGAGCGGCGg -3'
miRNA:   3'- -CCGGaCGCCac-----------CGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 130804 0.69 0.405552
Target:  5'- cGGCCgggGCGGaGGCggccgcggCCGA-AGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCUcUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 34130 0.69 0.397289
Target:  5'- cGCCUgccGCGGUGGCcgCCGcggcGAGCGcGCu -3'
miRNA:   3'- cCGGA---CGCCACCGa-GGCu---CUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 34394 0.7 0.335214
Target:  5'- cGGCCgccgccGCGGcagacgcGGCgCUGGGGGCGGCGg -3'
miRNA:   3'- -CCGGa-----CGCCa------CCGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 48488 0.71 0.293504
Target:  5'- gGGUCgagcGCGGcGcGCUCCG-GGGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCaC-CGAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 107601 0.68 0.457311
Target:  5'- cGGCCgugggugcgUGCGGUGGC-CUGGGGGagacggGGUAg -3'
miRNA:   3'- -CCGG---------ACGCCACCGaGGCUCUCg-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 103410 0.68 0.457311
Target:  5'- uGGCCcuccGCGGccGCUCCGc-AGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCacCGAGGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 35537 0.68 0.430976
Target:  5'- cGGCgagGUcGUGGCUgCCGAG-GCGGCGc -3'
miRNA:   3'- -CCGga-CGcCACCGA-GGCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 5810 0.68 0.475338
Target:  5'- cGCUUGCGcuUGGCgcgCCGGGuGCGuGCAg -3'
miRNA:   3'- cCGGACGCc-ACCGa--GGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 59855 0.66 0.550609
Target:  5'- cGGCCagGCGc-GGUcgCCGAGGGcCGGCGc -3'
miRNA:   3'- -CCGGa-CGCcaCCGa-GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 106813 0.67 0.484483
Target:  5'- cGGCCccGCGG-GGCgCCGGGccCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCaCCGaGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 18519 0.68 0.467181
Target:  5'- aGGCCaGCGcugcgGGCgcgccgccguccgcgCCGcAGAGCGGCAg -3'
miRNA:   3'- -CCGGaCGCca---CCGa--------------GGC-UCUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.