Results 41 - 60 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 120173 | 0.69 | 0.422397 |
Target: 5'- uGCCUGUugcucuggauGGUGGUgcuggCCGcgcGAGCGGCGc -3' miRNA: 3'- cCGGACG----------CCACCGa----GGCu--CUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 49043 | 0.7 | 0.332302 |
Target: 5'- aGCC-GUGGUGGCgcgcagcucacggCCGcGGGCGGCGg -3' miRNA: 3'- cCGGaCGCCACCGa------------GGCuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 32836 | 0.74 | 0.207122 |
Target: 5'- aGGCCcGC-GUGGCcgCCGAGAccGCGGCGc -3' miRNA: 3'- -CCGGaCGcCACCGa-GGCUCU--CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 33342 | 0.69 | 0.405552 |
Target: 5'- cGGCCUG-GGUGGCgcugcugCaCGAGGcGCaGGCGg -3' miRNA: 3'- -CCGGACgCCACCGa------G-GCUCU-CG-CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 88886 | 0.74 | 0.197425 |
Target: 5'- cGGCg-GCGGcGGCUcccgCCGGGGGCGGCu -3' miRNA: 3'- -CCGgaCGCCaCCGA----GGCUCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 33523 | 0.68 | 0.478986 |
Target: 5'- cGCCgccGCGGaGGCgCCGGGcgcgggcgccgaagaGGCGGCAg -3' miRNA: 3'- cCGGa--CGCCaCCGaGGCUC---------------UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 11324 | 0.72 | 0.250095 |
Target: 5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3' miRNA: 3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 53852 | 0.68 | 0.475338 |
Target: 5'- cGGCgCUgGCGGcgcUGGCggcgCCGAccgccgcggGGGCGGCGg -3' miRNA: 3'- -CCG-GA-CGCC---ACCGa---GGCU---------CUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 18519 | 0.68 | 0.467181 |
Target: 5'- aGGCCaGCGcugcgGGCgcgccgccguccgcgCCGcAGAGCGGCAg -3' miRNA: 3'- -CCGGaCGCca---CCGa--------------GGC-UCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 15011 | 0.68 | 0.457311 |
Target: 5'- cGGCC-GCGGUGGggCCGcgcGAGCcGCGg -3' miRNA: 3'- -CCGGaCGCCACCgaGGCu--CUCGcCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 102686 | 0.68 | 0.457311 |
Target: 5'- gGGCgggGCGGgggcagGGCgCCGGGcgGGCGGCGa -3' miRNA: 3'- -CCGga-CGCCa-----CCGaGGCUC--UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 12470 | 0.68 | 0.448436 |
Target: 5'- aGCCUccGCGGcuucccgcgUGGCggCGGGGGCGGCc -3' miRNA: 3'- cCGGA--CGCC---------ACCGagGCUCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 35537 | 0.68 | 0.430976 |
Target: 5'- cGGCgagGUcGUGGCUgCCGAG-GCGGCGc -3' miRNA: 3'- -CCGga-CGcCACCGA-GGCUCuCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 99799 | 0.69 | 0.397289 |
Target: 5'- cGCCUGUGGUgcGGggUCG-GAGCGGCc -3' miRNA: 3'- cCGGACGCCA--CCgaGGCuCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 31145 | 0.7 | 0.373161 |
Target: 5'- -uUCUGCGGcUGGcCUUCGcGGGCGGCGu -3' miRNA: 3'- ccGGACGCC-ACC-GAGGCuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 123794 | 0.7 | 0.350047 |
Target: 5'- gGGCCUGCGc-GGCggCGGcAGCGGCAg -3' miRNA: 3'- -CCGGACGCcaCCGagGCUcUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 34394 | 0.7 | 0.335214 |
Target: 5'- cGGCCgccgccGCGGcagacgcGGCgCUGGGGGCGGCGg -3' miRNA: 3'- -CCGGa-----CGCCa------CCGaGGCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 85782 | 0.71 | 0.313834 |
Target: 5'- cGGCCgaUGCGGUGcGCgUCGAGGGUgcgGGCGc -3' miRNA: 3'- -CCGG--ACGCCAC-CGaGGCUCUCG---CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 76389 | 0.71 | 0.306941 |
Target: 5'- cGGCCU-CGGggggGGCgCCGGGGgccGCGGCGg -3' miRNA: 3'- -CCGGAcGCCa---CCGaGGCUCU---CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 133921 | 0.72 | 0.261929 |
Target: 5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3' miRNA: 3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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