miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 31153 0.7 0.335214
Target:  5'- cGGCCgcgGCGGUGGCcuUCUGc--GCGGCc -3'
miRNA:   3'- -CCGGa--CGCCACCG--AGGCucuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 51570 0.7 0.345548
Target:  5'- gGGCUcGCGGgcgccuaccagaaGC-CCGAGAGCGGCGg -3'
miRNA:   3'- -CCGGaCGCCac-----------CGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 85185 0.7 0.350047
Target:  5'- cGGCCUGCGcGUacucGGCgCCGGGcAGCccGGCGg -3'
miRNA:   3'- -CCGGACGC-CA----CCGaGGCUC-UCG--CCGU- -5'
6353 5' -62.7 NC_001847.1 + 14326 0.7 0.350047
Target:  5'- uGCUcGCGGUGGggCCGGGcgugguGGCGGCGc -3'
miRNA:   3'- cCGGaCGCCACCgaGGCUC------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 107697 0.7 0.350047
Target:  5'- cGCCUGCGGuUGGCggcgCuCGcGGGCgGGCAc -3'
miRNA:   3'- cCGGACGCC-ACCGa---G-GCuCUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 123794 0.7 0.350047
Target:  5'- gGGCCUGCGc-GGCggCGGcAGCGGCAg -3'
miRNA:   3'- -CCGGACGCcaCCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 37465 0.7 0.357637
Target:  5'- gGGCCUGCGuUGGCcgggcCCGgccuGGcAGCGGCGg -3'
miRNA:   3'- -CCGGACGCcACCGa----GGC----UC-UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 124702 0.7 0.357637
Target:  5'- cGGCCaGgGGagccgGGCg-CGGGGGCGGCAg -3'
miRNA:   3'- -CCGGaCgCCa----CCGagGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 36983 0.7 0.365342
Target:  5'- cGGCgaGCGGgcccGCgCCGAGcGGCGGCGg -3'
miRNA:   3'- -CCGgaCGCCac--CGaGGCUC-UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 124761 0.7 0.365342
Target:  5'- cGGCUcGCGGgcGGCaCCGGGGGgGGCu -3'
miRNA:   3'- -CCGGaCGCCa-CCGaGGCUCUCgCCGu -5'
6353 5' -62.7 NC_001847.1 + 100598 0.7 0.373161
Target:  5'- cGGCCUGUGGccccaaGcGC-CCGGcGGGCGGCGc -3'
miRNA:   3'- -CCGGACGCCa-----C-CGaGGCU-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 62924 0.7 0.373161
Target:  5'- gGGCCcGCGGgcGGCUCCucgucGGGgGGCAg -3'
miRNA:   3'- -CCGGaCGCCa-CCGAGGcu---CUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 57929 0.7 0.373161
Target:  5'- gGGCCcgGCGGcccgcGGCUCCGucgcGGGCaGCAg -3'
miRNA:   3'- -CCGGa-CGCCa----CCGAGGCu---CUCGcCGU- -5'
6353 5' -62.7 NC_001847.1 + 31145 0.7 0.373161
Target:  5'- -uUCUGCGGcUGGcCUUCGcGGGCGGCGu -3'
miRNA:   3'- ccGGACGCC-ACC-GAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 87988 0.7 0.373161
Target:  5'- cGGCacuuUGCGGccgGGC-CCGAGGggcGCGGCGu -3'
miRNA:   3'- -CCGg---ACGCCa--CCGaGGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 13302 0.69 0.378701
Target:  5'- aGCaCUcGCGGUcgucgaggcagacgGGCUCCGGcacGGGCGGCGa -3'
miRNA:   3'- cCG-GA-CGCCA--------------CCGAGGCU---CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 111286 0.69 0.381092
Target:  5'- gGGCCgGgGGcGGCgcucggCCGGGGGCGGg- -3'
miRNA:   3'- -CCGGaCgCCaCCGa-----GGCUCUCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 8473 0.69 0.381092
Target:  5'- gGGCCgGgGGcGGCgcucggCCGGGGGCGGg- -3'
miRNA:   3'- -CCGGaCgCCaCCGa-----GGCUCUCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 12944 0.69 0.389135
Target:  5'- cGUCgUGCGGUggggcGGCgggCCGGGGGUGGCc -3'
miRNA:   3'- cCGG-ACGCCA-----CCGa--GGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 34130 0.69 0.397289
Target:  5'- cGCCUgccGCGGUGGCcgCCGcggcGAGCGcGCu -3'
miRNA:   3'- cCGGA---CGCCACCGa-GGCu---CUCGC-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.