miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 46514 0.71 0.286959
Target:  5'- uGCCaGCGGcagcGCUCgGGGGGCGGCGg -3'
miRNA:   3'- cCGGaCGCCac--CGAGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 48488 0.71 0.293504
Target:  5'- gGGUCgagcGCGGcGcGCUCCG-GGGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCaC-CGAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 91762 0.71 0.300164
Target:  5'- cGGUCcGCGG-GcGCUCCGucGGCGGCGc -3'
miRNA:   3'- -CCGGaCGCCaC-CGAGGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 61979 0.71 0.300164
Target:  5'- cGGCgCgGCGGgcauaaugGGC-CCGaAGAGCGGCGc -3'
miRNA:   3'- -CCG-GaCGCCa-------CCGaGGC-UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96918 0.71 0.305577
Target:  5'- cGGCCgcguagaggcgcGCGGcccgGGcCUCCGcGGGCGGCAg -3'
miRNA:   3'- -CCGGa-----------CGCCa---CC-GAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 76389 0.71 0.306941
Target:  5'- cGGCCU-CGGggggGGCgCCGGGGgccGCGGCGg -3'
miRNA:   3'- -CCGGAcGCCa---CCGaGGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 86474 0.71 0.312447
Target:  5'- cGCCgacgGCGGcacggacgacgaGGCUgCGGGGGCGGCGg -3'
miRNA:   3'- cCGGa---CGCCa-----------CCGAgGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 74126 0.71 0.31314
Target:  5'- cGGCCguggugcUGCGcGUGGCgCCGGGgcgaaugauGGCGGCGc -3'
miRNA:   3'- -CCGG-------ACGC-CACCGaGGCUC---------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59886 0.71 0.313834
Target:  5'- cGGCCUccGCGuUGGCgagGAGGGCGGCGc -3'
miRNA:   3'- -CCGGA--CGCcACCGaggCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 85782 0.71 0.313834
Target:  5'- cGGCCgaUGCGGUGcGCgUCGAGGGUgcgGGCGc -3'
miRNA:   3'- -CCGG--ACGCCAC-CGaGGCUCUCG---CCGU- -5'
6353 5' -62.7 NC_001847.1 + 68073 0.71 0.320844
Target:  5'- cGCCUGCGGcggGGCgaacgCCGcggcgcGAGCGGUg -3'
miRNA:   3'- cCGGACGCCa--CCGa----GGCu-----CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 127334 0.71 0.320844
Target:  5'- cGCCgagGCGGccGGCUgCCGcggcaGGGGCGGCGg -3'
miRNA:   3'- cCGGa--CGCCa-CCGA-GGC-----UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 19802 0.71 0.320844
Target:  5'- cGGCggagGCGGUGGCggUGgcGGGGCGGCAg -3'
miRNA:   3'- -CCGga--CGCCACCGagGC--UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 105682 0.7 0.327971
Target:  5'- cGGCC-GCGGgcGGCgcuucggCCGcGGGCGGCGc -3'
miRNA:   3'- -CCGGaCGCCa-CCGa------GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32936 0.7 0.327971
Target:  5'- aGGCCgGCGGcGGggCCGGGGG-GGCGg -3'
miRNA:   3'- -CCGGaCGCCaCCgaGGCUCUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 67615 0.7 0.327971
Target:  5'- cGCCUGCGGaaaaaGGCggcgCCGgcGGAGaCGGCGg -3'
miRNA:   3'- cCGGACGCCa----CCGa---GGC--UCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 49043 0.7 0.332302
Target:  5'- aGCC-GUGGUGGCgcgcagcucacggCCGcGGGCGGCGg -3'
miRNA:   3'- cCGGaCGCCACCGa------------GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 31153 0.7 0.335214
Target:  5'- cGGCCgcgGCGGUGGCcuUCUGc--GCGGCc -3'
miRNA:   3'- -CCGGa--CGCCACCG--AGGCucuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 34394 0.7 0.335214
Target:  5'- cGGCCgccgccGCGGcagacgcGGCgCUGGGGGCGGCGg -3'
miRNA:   3'- -CCGGa-----CGCCa------CCGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 37583 0.7 0.335214
Target:  5'- uGGCCgcUGCGGcugcGGCggCCGGGGGcCGGCc -3'
miRNA:   3'- -CCGG--ACGCCa---CCGa-GGCUCUC-GCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.